Hi all,
I tried to install yt using the All-in-One Installation Script. I'm using Ubuntu 14.04, and I have installed the required packeges listed at the beginning of the script.
All the installation process went fine, then I sourced the activation script in a new shell, and to check if everything was fine, I typed yt --help, and this is the output:
Traceback (most recent call last): File "/home/andrea/Software/yt/yt-x86_64/bin/yt", line 9, in <module> load_entry_point('yt==3.2.3', 'console_scripts', 'yt')() File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 558, in load_entry_point File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 2682, in load_entry_point File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 2355, in load File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 2361, in resolve File "/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/__init__.py", line 146, in <module> from yt.visualization.api import \ File "/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/visualization/api.py", line 22, in <module> from .particle_plots import \ File "/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/visualization/particle_plots.py", line 24, in <module> from .plot_window import \ File "/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/visualization/plot_window.py", line 34, in <module> from .plot_modifications import callback_registry File "/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/visualization/plot_modifications.py", line 26, in <module> from mpl_toolkits.axes_grid1.anchored_artists import AnchoredSizeBar File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/mpl_toolkits/axes_grid1/__init__.py", line 9, in <module> from .axes_grid import Grid, ImageGrid, AxesGrid File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/mpl_toolkits/axes_grid1/axes_grid.py", line 8, in <module> import matplotlib.pyplot as plt File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/pyplot.py", line 109, in <module> _backend_mod, new_figure_manager, draw_if_interactive, _show = pylab_setup() File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/__init__.py", line 32, in pylab_setup globals(),locals(),[backend_name],0) File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/backend_qt4agg.py", line 17, in <module> from .backend_qt5agg import NavigationToolbar2QTAgg File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/backend_qt5agg.py", line 18, in <module> from .backend_qt5 import QtCore File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/backend_qt5.py", line 31, in <module> from .qt_compat import QtCore, QtGui, QtWidgets, _getSaveFileName, __version__ File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/qt_compat.py", line 126, in <module> from PySide import QtCore, QtGui, __version__, __version_info__ ImportError: No module named PySide
I tried different configurations, such as installing the stable and the yt branch, turn on/off the scipy installation flag in install_script.sh, but nothing.
Please, do you have any suggestions?
Thanks in advance, Andrea
Hi Andrea,
I think a simple fix would be to set:
~/.config/matplotlib/matplotlibrc
to include this:
backend: Agg
That should fix it by not trying to import Qt.
On Mon, Apr 18, 2016 at 6:02 AM, Andrea Negri negri.andre@gmail.com wrote:
Hi all,
I tried to install yt using the All-in-One Installation Script. I'm using Ubuntu 14.04, and I have installed the required packeges listed at the beginning of the script.
All the installation process went fine, then I sourced the activation script in a new shell, and to check if everything was fine, I typed yt --help, and this is the output:
Traceback (most recent call last): File "/home/andrea/Software/yt/yt-x86_64/bin/yt", line 9, in <module> load_entry_point('yt==3.2.3', 'console_scripts', 'yt')() File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 558, in load_entry_point File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 2682, in load_entry_point File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 2355, in load File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 2361, in resolve File "/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/__init__.py", line 146, in <module> from yt.visualization.api import \ File "/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/visualization/api.py", line 22, in <module> from .particle_plots import \ File "/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/visualization/particle_plots.py", line 24, in <module> from .plot_window import \ File "/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/visualization/plot_window.py", line 34, in <module> from .plot_modifications import callback_registry File "/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/visualization/plot_modifications.py", line 26, in <module> from mpl_toolkits.axes_grid1.anchored_artists import AnchoredSizeBar File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/mpl_toolkits/axes_grid1/__init__.py", line 9, in <module> from .axes_grid import Grid, ImageGrid, AxesGrid File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/mpl_toolkits/axes_grid1/axes_grid.py", line 8, in <module> import matplotlib.pyplot as plt File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/pyplot.py", line 109, in <module> _backend_mod, new_figure_manager, draw_if_interactive, _show = pylab_setup() File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/__init__.py", line 32, in pylab_setup globals(),locals(),[backend_name],0) File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/backend_qt4agg.py", line 17, in <module> from .backend_qt5agg import NavigationToolbar2QTAgg File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/backend_qt5agg.py", line 18, in <module> from .backend_qt5 import QtCore File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/backend_qt5.py", line 31, in <module> from .qt_compat import QtCore, QtGui, QtWidgets, _getSaveFileName, __version__ File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/qt_compat.py", line 126, in <module> from PySide import QtCore, QtGui, __version__, __version_info__ ImportError: No module named PySide
I tried different configurations, such as installing the stable and the yt branch, turn on/off the scipy installation flag in install_script.sh, but nothing.
Please, do you have any suggestions?
Thanks in advance, Andrea _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Hi Matthew,
that fixed the problem. However, now I'm not able to do a very simple plot. I took the example in http://yt-project.org/doc/examining/generic_array_data.html, put everything in test.py and this is the result, nothing appears. Am I doing something wrong?
Thank, Andrea
(yt-x86_64)andrea@zen:~/Software/yt$ ipython test.py yt : [INFO ] 2016-04-18 22:55:38,406 Parameters: current_time = 0.0 yt : [INFO ] 2016-04-18 22:55:38,406 Parameters: domain_dimensions = [64 64 64] yt : [INFO ] 2016-04-18 22:55:38,407 Parameters: domain_left_edge = [-1.5 -1.5 -1.5] yt : [INFO ] 2016-04-18 22:55:38,407 Parameters: domain_right_edge = [ 1.5 1.5 1.5] yt : [INFO ] 2016-04-18 22:55:38,407 Parameters: cosmological_simulation = 0.0 yt : [INFO ] 2016-04-18 22:55:38,457 Loading field plugins. yt : [INFO ] 2016-04-18 22:55:38,457 Loaded angular_momentum (8 new fields) yt : [INFO ] 2016-04-18 22:55:38,457 Loaded astro (15 new fields) yt : [INFO ] 2016-04-18 22:55:38,457 Loaded cosmology (22 new fields) yt : [INFO ] 2016-04-18 22:55:38,458 Loaded fluid (64 new fields) yt : [INFO ] 2016-04-18 22:55:38,459 Loaded fluid_vector (96 new fields) yt : [INFO ] 2016-04-18 22:55:38,459 Loaded geometric (112 new fields) yt : [INFO ] 2016-04-18 22:55:38,459 Loaded local (112 new fields) yt : [INFO ] 2016-04-18 22:55:38,459 Loaded magnetic_field (120 new fields) yt : [INFO ] 2016-04-18 22:55:38,459 Loaded my_plugins (120 new fields) yt : [INFO ] 2016-04-18 22:55:38,460 Loaded species (122 new fields) yt : [INFO ] 2016-04-18 22:55:38,686 xlim = -1.500000 1.500000 yt : [INFO ] 2016-04-18 22:55:38,686 ylim = -1.500000 1.500000 yt : [INFO ] 2016-04-18 22:55:38,688 xlim = -1.500000 1.500000 yt : [INFO ] 2016-04-18 22:55:38,688 ylim = -1.500000 1.500000 yt : [INFO ] 2016-04-18 22:55:38,689 Making a fixed resolution buffer of (('gas', 'density')) 800 by 800 <yt.visualization.plot_window.AxisAlignedSlicePlot at 0x7fdf305ac450>
On 18 April 2016 at 15:21, Matthew Turk matthewturk@gmail.com wrote:
Hi Andrea,
I think a simple fix would be to set:
~/.config/matplotlib/matplotlibrc
to include this:
backend: Agg
That should fix it by not trying to import Qt.
On Mon, Apr 18, 2016 at 6:02 AM, Andrea Negri negri.andre@gmail.com wrote:
Hi all,
I tried to install yt using the All-in-One Installation Script. I'm using Ubuntu 14.04, and I have installed the required packeges listed at the beginning of the script.
All the installation process went fine, then I sourced the activation script in a new shell, and to check if everything was fine, I typed yt --help, and this is the output:
Traceback (most recent call last): File "/home/andrea/Software/yt/yt-x86_64/bin/yt", line 9, in <module> load_entry_point('yt==3.2.3', 'console_scripts', 'yt')() File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 558, in load_entry_point File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 2682, in load_entry_point File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 2355, in load File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 2361, in resolve File "/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/__init__.py", line 146, in <module> from yt.visualization.api import \ File "/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/visualization/api.py", line 22, in <module> from .particle_plots import \ File "/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/visualization/particle_plots.py", line 24, in <module> from .plot_window import \ File "/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/visualization/plot_window.py", line 34, in <module> from .plot_modifications import callback_registry File "/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/visualization/plot_modifications.py", line 26, in <module> from mpl_toolkits.axes_grid1.anchored_artists import AnchoredSizeBar File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/mpl_toolkits/axes_grid1/__init__.py", line 9, in <module> from .axes_grid import Grid, ImageGrid, AxesGrid File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/mpl_toolkits/axes_grid1/axes_grid.py", line 8, in <module> import matplotlib.pyplot as plt File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/pyplot.py", line 109, in <module> _backend_mod, new_figure_manager, draw_if_interactive, _show = pylab_setup() File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/__init__.py", line 32, in pylab_setup globals(),locals(),[backend_name],0) File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/backend_qt4agg.py", line 17, in <module> from .backend_qt5agg import NavigationToolbar2QTAgg File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/backend_qt5agg.py", line 18, in <module> from .backend_qt5 import QtCore File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/backend_qt5.py", line 31, in <module> from .qt_compat import QtCore, QtGui, QtWidgets, _getSaveFileName, __version__ File "/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/qt_compat.py", line 126, in <module> from PySide import QtCore, QtGui, __version__, __version_info__ ImportError: No module named PySide
I tried different configurations, such as installing the stable and the yt branch, turn on/off the scipy installation flag in install_script.sh, but nothing.
Please, do you have any suggestions?
Thanks in advance, Andrea _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Hi Andrea,
The "show()" command only works inside the Jupyter notebook (also known as the IPython notebook).
You should do "slc.save('/path/to/img.png')" instead, that will save the SlicePlot to disk as 'img.png'. The reason "show()" works in the example you linked to is because that part of the documentation is actually a Jupyter notebook.
More details about save() here:
http://yt-project.org/doc/visualizing/plots.html#saving-plots
-Nathan
On Mon, Apr 18, 2016 at 3:58 PM, Andrea Negri negri.andre@gmail.com wrote:
Hi Matthew,
that fixed the problem. However, now I'm not able to do a very simple plot. I took the example in http://yt-project.org/doc/examining/generic_array_data.html, put everything in test.py and this is the result, nothing appears. Am I doing something wrong?
Thank, Andrea
(yt-x86_64)andrea@zen:~/Software/yt$ ipython test.py yt : [INFO ] 2016-04-18 22:55:38,406 Parameters: current_time = 0.0 yt : [INFO ] 2016-04-18 22:55:38,406 Parameters: domain_dimensions = [64 64 64] yt : [INFO ] 2016-04-18 22:55:38,407 Parameters: domain_left_edge = [-1.5 -1.5 -1.5] yt : [INFO ] 2016-04-18 22:55:38,407 Parameters: domain_right_edge = [ 1.5 1.5 1.5] yt : [INFO ] 2016-04-18 22:55:38,407 Parameters: cosmological_simulation = 0.0 yt : [INFO ] 2016-04-18 22:55:38,457 Loading field plugins. yt : [INFO ] 2016-04-18 22:55:38,457 Loaded angular_momentum (8 new fields) yt : [INFO ] 2016-04-18 22:55:38,457 Loaded astro (15 new fields) yt : [INFO ] 2016-04-18 22:55:38,457 Loaded cosmology (22 new fields) yt : [INFO ] 2016-04-18 22:55:38,458 Loaded fluid (64 new fields) yt : [INFO ] 2016-04-18 22:55:38,459 Loaded fluid_vector (96 new fields) yt : [INFO ] 2016-04-18 22:55:38,459 Loaded geometric (112 new fields) yt : [INFO ] 2016-04-18 22:55:38,459 Loaded local (112 new fields) yt : [INFO ] 2016-04-18 22:55:38,459 Loaded magnetic_field (120 new fields) yt : [INFO ] 2016-04-18 22:55:38,459 Loaded my_plugins (120 new fields) yt : [INFO ] 2016-04-18 22:55:38,460 Loaded species (122 new fields) yt : [INFO ] 2016-04-18 22:55:38,686 xlim = -1.500000 1.500000 yt : [INFO ] 2016-04-18 22:55:38,686 ylim = -1.500000 1.500000 yt : [INFO ] 2016-04-18 22:55:38,688 xlim = -1.500000 1.500000 yt : [INFO ] 2016-04-18 22:55:38,688 ylim = -1.500000 1.500000 yt : [INFO ] 2016-04-18 22:55:38,689 Making a fixed resolution buffer of (('gas', 'density')) 800 by 800 <yt.visualization.plot_window.AxisAlignedSlicePlot at 0x7fdf305ac450>
On 18 April 2016 at 15:21, Matthew Turk matthewturk@gmail.com wrote:
Hi Andrea,
I think a simple fix would be to set:
~/.config/matplotlib/matplotlibrc
to include this:
backend: Agg
That should fix it by not trying to import Qt.
On Mon, Apr 18, 2016 at 6:02 AM, Andrea Negri negri.andre@gmail.com
wrote:
Hi all,
I tried to install yt using the All-in-One Installation Script. I'm using Ubuntu 14.04, and I have installed the required packeges listed at the beginning of the script.
All the installation process went fine, then I sourced the activation script in a new shell, and to check if everything was fine, I typed yt --help, and this is the output:
Traceback (most recent call last): File "/home/andrea/Software/yt/yt-x86_64/bin/yt", line 9, in <module> load_entry_point('yt==3.2.3', 'console_scripts', 'yt')() File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 558, in load_entry_point File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 2682, in load_entry_point File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 2355, in load File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 2361, in resolve File "/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/__init__.py", line 146, in <module> from yt.visualization.api import \ File
"/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/visualization/api.py",
line 22, in <module> from .particle_plots import \ File
"/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/visualization/particle_plots.py",
line 24, in <module> from .plot_window import \ File
"/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/visualization/plot_window.py",
line 34, in <module> from .plot_modifications import callback_registry File
"/home/andrea/Software/yt/yt-x86_64/src/yt-hg/yt/visualization/plot_modifications.py",
line 26, in <module> from mpl_toolkits.axes_grid1.anchored_artists import AnchoredSizeBar File
"/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/mpl_toolkits/axes_grid1/__init__.py",
line 9, in <module> from .axes_grid import Grid, ImageGrid, AxesGrid File
"/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/mpl_toolkits/axes_grid1/axes_grid.py",
line 8, in <module> import matplotlib.pyplot as plt File
"/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/pyplot.py",
line 109, in <module> _backend_mod, new_figure_manager, draw_if_interactive, _show =
pylab_setup()
File
"/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/__init__.py",
line 32, in pylab_setup globals(),locals(),[backend_name],0) File
"/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/backend_qt4agg.py",
line 17, in <module> from .backend_qt5agg import NavigationToolbar2QTAgg File
"/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/backend_qt5agg.py",
line 18, in <module> from .backend_qt5 import QtCore File
"/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/backend_qt5.py",
line 31, in <module> from .qt_compat import QtCore, QtGui, QtWidgets, _getSaveFileName, __version__ File
"/home/andrea/Software/yt/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/backends/qt_compat.py",
line 126, in <module> from PySide import QtCore, QtGui, __version__, __version_info__ ImportError: No module named PySide
I tried different configurations, such as installing the stable and the yt branch, turn on/off the scipy installation flag in install_script.sh, but nothing.
Please, do you have any suggestions?
Thanks in advance, Andrea _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
-
Andrea Negri -
Matthew Turk -
Nathan Goldbaum