broke yt trying to update
Dear all, After a pretty long (few month) hiatus, I just tried to update my yt and seem to have broken it. Now my desktop is frozen so I can't cut and paste the long outputs, but it boils down to:
yt update
The current version of the code is: ___ 0be45301e0eb (yt) tip ___ This version CAN be automatically updated. .... added 1740 changesets with 3520 changes to 355 files (+1 heads) Updating the repository 126 files updates, 0 files merged, 0 files removed, 0 files unresolved BROKEN: See /u/stonnes/Installs/yt-x86_64/src/yt-hg/yt_updater.log So I looked at that and the first thing it had was: pulling from https://bitbucket.org/yt_analysis/yt/ (run 'hg update' to get a working copy) So I ran hg update and then it failed and said I had no module named write_array When I start python2.7 and type
from yt.mods import *
I get the same error (no module write_array) Any advice would be appreciated! Thanks, Stephanie
Hi Stephanie, Try running: yt update --all at the command line. This will update the dependencies in addition to the yt codebase, and it may clear up your problems. Cameron On Wed, Aug 28, 2013 at 12:55 PM, Stephanie Tonnesen <stonnes@gmail.com>wrote:
Dear all,
After a pretty long (few month) hiatus, I just tried to update my yt and seem to have broken it.
Now my desktop is frozen so I can't cut and paste the long outputs, but it boils down to:
yt update
The current version of the code is:
___ 0be45301e0eb (yt) tip ___
This version CAN be automatically updated.
.... added 1740 changesets with 3520 changes to 355 files (+1 heads) Updating the repository 126 files updates, 0 files merged, 0 files removed, 0 files unresolved BROKEN: See /u/stonnes/Installs/yt-x86_64/src/yt-hg/yt_updater.log
So I looked at that
and the first thing it had was: pulling from https://bitbucket.org/yt_analysis/yt/ (run 'hg update' to get a working copy)
So I ran hg update and then it failed and said I had no module named write_array
When I start python2.7
and type
from yt.mods import *
I get the same error (no module write_array)
Any advice would be appreciated!
Thanks,
Stephanie
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
-- Cameron Hummels Postdoctoral Researcher Steward Observatory University of Arizona http://chummels.org
Hi Stephanie, Looks to me like write_array is not accessible anymore, which is breaking the "yt" command. (This is a problem we should address.) At worst, you may need to re-run a new copy of the install script; you can do this over top of the old one, or remove and start anew. We have some packaging plans under way right now that will reduce the importance of the install script and the "yt update" command. But more on that as they are available! -Matt On Wed, Aug 28, 2013 at 3:55 PM, Stephanie Tonnesen <stonnes@gmail.com> wrote:
Dear all,
After a pretty long (few month) hiatus, I just tried to update my yt and seem to have broken it.
Now my desktop is frozen so I can't cut and paste the long outputs, but it boils down to:
yt update
The current version of the code is:
___ 0be45301e0eb (yt) tip ___
This version CAN be automatically updated.
.... added 1740 changesets with 3520 changes to 355 files (+1 heads) Updating the repository 126 files updates, 0 files merged, 0 files removed, 0 files unresolved BROKEN: See /u/stonnes/Installs/yt-x86_64/src/yt-hg/yt_updater.log
So I looked at that
and the first thing it had was: pulling from https://bitbucket.org/yt_analysis/yt/ (run 'hg update' to get a working copy)
So I ran hg update and then it failed and said I had no module named write_array
When I start python2.7
and type
from yt.mods import *
I get the same error (no module write_array)
Any advice would be appreciated!
Thanks,
Stephanie
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
So running yt update --all did not work, unfortunately. It still gives me the error: ImportError: No module names write_array Looks like I might have to run a new copy of the install script. Thanks! Stephanie On Wed, Aug 28, 2013 at 4:40 PM, Matthew Turk <matthewturk@gmail.com> wrote:
Hi Stephanie,
Looks to me like write_array is not accessible anymore, which is breaking the "yt" command. (This is a problem we should address.) At worst, you may need to re-run a new copy of the install script; you can do this over top of the old one, or remove and start anew.
We have some packaging plans under way right now that will reduce the importance of the install script and the "yt update" command. But more on that as they are available!
-Matt
On Wed, Aug 28, 2013 at 3:55 PM, Stephanie Tonnesen <stonnes@gmail.com> wrote:
Dear all,
After a pretty long (few month) hiatus, I just tried to update my yt and seem to have broken it.
Now my desktop is frozen so I can't cut and paste the long outputs, but it boils down to:
yt update
The current version of the code is:
___ 0be45301e0eb (yt) tip ___
This version CAN be automatically updated.
.... added 1740 changesets with 3520 changes to 355 files (+1 heads) Updating the repository 126 files updates, 0 files merged, 0 files removed, 0 files unresolved BROKEN: See /u/stonnes/Installs/yt-x86_64/src/yt-hg/yt_updater.log
So I looked at that
and the first thing it had was: pulling from https://bitbucket.org/yt_analysis/yt/ (run 'hg update' to get a working copy)
So I ran hg update and then it failed and said I had no module named write_array
When I start python2.7
and type
from yt.mods import *
I get the same error (no module write_array)
Any advice would be appreciated!
Thanks,
Stephanie
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Actually, another question then about rerunning a new copy of the install script. Where do I put it to run it again? right now my file structure looks like /u/stonnes/Installs/yt-x86_64/ bin/ include/ lib/ man/ share/ src/ yt_install.log do I put the new install_script.sh in Installs/ ? Thanks again, Stephanie On Wed, Aug 28, 2013 at 9:14 PM, Stephanie Tonnesen <stonnes@gmail.com>wrote:
So running yt update --all did not work, unfortunately. It still gives me the error:
ImportError: No module names write_array
Looks like I might have to run a new copy of the install script.
Thanks!
Stephanie
On Wed, Aug 28, 2013 at 4:40 PM, Matthew Turk <matthewturk@gmail.com>wrote:
Hi Stephanie,
Looks to me like write_array is not accessible anymore, which is breaking the "yt" command. (This is a problem we should address.) At worst, you may need to re-run a new copy of the install script; you can do this over top of the old one, or remove and start anew.
We have some packaging plans under way right now that will reduce the importance of the install script and the "yt update" command. But more on that as they are available!
-Matt
On Wed, Aug 28, 2013 at 3:55 PM, Stephanie Tonnesen <stonnes@gmail.com> wrote:
Dear all,
After a pretty long (few month) hiatus, I just tried to update my yt and seem to have broken it.
Now my desktop is frozen so I can't cut and paste the long outputs, but it boils down to:
yt update
The current version of the code is:
___ 0be45301e0eb (yt) tip ___
This version CAN be automatically updated.
.... added 1740 changesets with 3520 changes to 355 files (+1 heads) Updating the repository 126 files updates, 0 files merged, 0 files removed, 0 files unresolved BROKEN: See /u/stonnes/Installs/yt-x86_64/src/yt-hg/yt_updater.log
So I looked at that
and the first thing it had was: pulling from https://bitbucket.org/yt_analysis/yt/ (run 'hg update' to get a working copy)
So I ran hg update and then it failed and said I had no module named write_array
When I start python2.7
and type
from yt.mods import *
I get the same error (no module write_array)
Any advice would be appreciated!
Thanks,
Stephanie
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Yup, that's exactly where it goes. j On Wed, Aug 28, 2013 at 9:24 PM, Stephanie Tonnesen <stonnes@gmail.com>wrote:
Actually, another question then about rerunning a new copy of the install script. Where do I put it to run it again? right now my file structure looks like
/u/stonnes/Installs/yt-x86_64/ bin/ include/ lib/ man/ share/ src/ yt_install.log
do I put the new install_script.sh in Installs/ ?
Thanks again,
Stephanie
On Wed, Aug 28, 2013 at 9:14 PM, Stephanie Tonnesen <stonnes@gmail.com>wrote:
So running yt update --all did not work, unfortunately. It still gives me the error:
ImportError: No module names write_array
Looks like I might have to run a new copy of the install script.
Thanks!
Stephanie
On Wed, Aug 28, 2013 at 4:40 PM, Matthew Turk <matthewturk@gmail.com>wrote:
Hi Stephanie,
Looks to me like write_array is not accessible anymore, which is breaking the "yt" command. (This is a problem we should address.) At worst, you may need to re-run a new copy of the install script; you can do this over top of the old one, or remove and start anew.
We have some packaging plans under way right now that will reduce the importance of the install script and the "yt update" command. But more on that as they are available!
-Matt
On Wed, Aug 28, 2013 at 3:55 PM, Stephanie Tonnesen <stonnes@gmail.com> wrote:
Dear all,
After a pretty long (few month) hiatus, I just tried to update my yt and seem to have broken it.
Now my desktop is frozen so I can't cut and paste the long outputs, but it boils down to:
yt update
The current version of the code is:
___ 0be45301e0eb (yt) tip ___
This version CAN be automatically updated.
.... added 1740 changesets with 3520 changes to 355 files (+1 heads) Updating the repository 126 files updates, 0 files merged, 0 files removed, 0 files unresolved BROKEN: See /u/stonnes/Installs/yt-x86_64/src/yt-hg/yt_updater.log
So I looked at that
and the first thing it had was: pulling from https://bitbucket.org/yt_analysis/yt/ (run 'hg update' to get a working copy)
So I ran hg update and then it failed and said I had no module named write_array
When I start python2.7
and type
from yt.mods import *
I get the same error (no module write_array)
Any advice would be appreciated!
Thanks,
Stephanie
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Okay! Thanks for all the help, the new installation loaded yt.mods for me (other checks will have to wait for tomorrow)! For anyone who is interested, here are two things I thought were sort of strange in the installation: 1) on my first attempt at bash install_script.sh, the installation failed with the message below: Installing BZLIB Installing ZLIB Installing PNG Installing FreeType2 Installing HDF5 Installing SQLite3 Installing Python. This may take a while, but don't worry. yt loves you. Installing mercurial-2.7 Setting YT_DIR=/u/stonnes/Installs/yt-x86_64/src/yt-hg/ Installing distribute Installing pip Installing numpy-1.7.1 Installing matplotlib-1.3.0 Installing ZeroMQ ******************************************** FAILURE REPORT: ******************************************** CXXLD test_invalid_rep CXX test_msg_flags.o CXXLD test_msg_flags CXX test_connect_resolve.o CXXLD test_connect_resolve CXX test_connect_delay.o test_connect_delay.cpp:260:2: error: no newline at end of file make[1]: *** [test_connect_delay.o] Error 1 make[1]: Leaving directory `/u/stonnes/Installs/yt-x86_64/src/zeromq-3.2.3/tests' make: *** [install-recursive] Error 1 ******************************************** ******************************************** Failure. Check /u/stonnes/Installs/yt-x86_64/yt_install.log. The last 10 lines are above. This was easily fixed by just adding a line at the end of the file. I am not sure if it was my computer that was the problem, or if a recent change is going to make this fail for other people, too. 2) This initial set-up list looks normal, but it seems strange that for *almost* everything =1 means the installation will happen, EXCEPT Rockstar. INST_ZLIB = 1 so I will be installing zlib INST_BZLIB = 1 so I will be installing bzlib INST_PNG = 1 so I will be installing libpng INST_FTYPE = 1 so I will be installing freetype2 INST_SQLITE3 = 1 so I will be installing SQLite3 INST_HG = 1 so I will be installing Mercurial INST_ENZO = 0 so I won't be checking out Enzo INST_PYX = 0 so I won't be installing PyX INST_SCIPY = 0 so I won't be installing scipy INST_0MQ = 1 so I will be installing ZeroMQ INST_ROCKSTAR = 0 so I will be installing Rockstar -Stephanie On Wed, Aug 28, 2013 at 9:25 PM, j s oishi <jsoishi@gmail.com> wrote:
Yup, that's exactly where it goes.
j
On Wed, Aug 28, 2013 at 9:24 PM, Stephanie Tonnesen <stonnes@gmail.com>wrote:
Actually, another question then about rerunning a new copy of the install script. Where do I put it to run it again? right now my file structure looks like
/u/stonnes/Installs/yt-x86_64/ bin/ include/ lib/ man/ share/ src/ yt_install.log
do I put the new install_script.sh in Installs/ ?
Thanks again,
Stephanie
On Wed, Aug 28, 2013 at 9:14 PM, Stephanie Tonnesen <stonnes@gmail.com>wrote:
So running yt update --all did not work, unfortunately. It still gives me the error:
ImportError: No module names write_array
Looks like I might have to run a new copy of the install script.
Thanks!
Stephanie
On Wed, Aug 28, 2013 at 4:40 PM, Matthew Turk <matthewturk@gmail.com>wrote:
Hi Stephanie,
Looks to me like write_array is not accessible anymore, which is breaking the "yt" command. (This is a problem we should address.) At worst, you may need to re-run a new copy of the install script; you can do this over top of the old one, or remove and start anew.
We have some packaging plans under way right now that will reduce the importance of the install script and the "yt update" command. But more on that as they are available!
-Matt
On Wed, Aug 28, 2013 at 3:55 PM, Stephanie Tonnesen <stonnes@gmail.com> wrote:
Dear all,
After a pretty long (few month) hiatus, I just tried to update my yt and seem to have broken it.
Now my desktop is frozen so I can't cut and paste the long outputs, but it boils down to:
yt update
The current version of the code is:
___ 0be45301e0eb (yt) tip ___
This version CAN be automatically updated.
.... added 1740 changesets with 3520 changes to 355 files (+1 heads) Updating the repository 126 files updates, 0 files merged, 0 files removed, 0 files unresolved BROKEN: See /u/stonnes/Installs/yt-x86_64/src/yt-hg/yt_updater.log
So I looked at that
and the first thing it had was: pulling from https://bitbucket.org/yt_analysis/yt/ (run 'hg update' to get a working copy)
So I ran hg update and then it failed and said I had no module named write_array
When I start python2.7
and type
> from yt.mods import *
I get the same error (no module write_array)
Any advice would be appreciated!
Thanks,
Stephanie
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Hi Stephanie, Thanks very much for the detailed and conscientious reports. The first issue is an upstream issue with the zeromq release (3.2.3) we distribute: https://github.com/zeromq/zeromq3-x/issues/103. As you saw, it can be fixed by adding the needed newline. I've reported an issue about this on our issue tracker ( https://bitbucket.org/yt_analysis/yt/issue/641/zeromq-323-release-tarball-ha...), it should hopefully be fixed soon so others will not have the same issue. The second issue is due to a benign typo in the install script. I've opened a PR to fix it: https://bitbucket.org/yt_analysis/yt/pull-request/582/fixing-a-benign-typo-i... . Cheers, Nathan Goldbaum On Wed, Aug 28, 2013 at 7:34 PM, Stephanie Tonnesen <stonnes@gmail.com>wrote:
Okay! Thanks for all the help, the new installation loaded yt.mods for me (other checks will have to wait for tomorrow)!
For anyone who is interested, here are two things I thought were sort of strange in the installation:
1) on my first attempt at bash install_script.sh, the installation failed with the message below:
Installing BZLIB Installing ZLIB Installing PNG Installing FreeType2 Installing HDF5 Installing SQLite3 Installing Python. This may take a while, but don't worry. yt loves you. Installing mercurial-2.7 Setting YT_DIR=/u/stonnes/Installs/yt-x86_64/src/yt-hg/ Installing distribute Installing pip Installing numpy-1.7.1 Installing matplotlib-1.3.0 Installing ZeroMQ ******************************************** FAILURE REPORT: ********************************************
CXXLD test_invalid_rep CXX test_msg_flags.o CXXLD test_msg_flags CXX test_connect_resolve.o CXXLD test_connect_resolve CXX test_connect_delay.o test_connect_delay.cpp:260:2: error: no newline at end of file make[1]: *** [test_connect_delay.o] Error 1 make[1]: Leaving directory `/u/stonnes/Installs/yt-x86_64/src/zeromq-3.2.3/tests' make: *** [install-recursive] Error 1
******************************************** ******************************************** Failure. Check /u/stonnes/Installs/yt-x86_64/yt_install.log. The last 10 lines are above.
This was easily fixed by just adding a line at the end of the file. I am not sure if it was my computer that was the problem, or if a recent change is going to make this fail for other people, too.
2) This initial set-up list looks normal, but it seems strange that for *almost* everything =1 means the installation will happen, EXCEPT Rockstar.
INST_ZLIB = 1 so I will be installing zlib INST_BZLIB = 1 so I will be installing bzlib INST_PNG = 1 so I will be installing libpng INST_FTYPE = 1 so I will be installing freetype2 INST_SQLITE3 = 1 so I will be installing SQLite3 INST_HG = 1 so I will be installing Mercurial INST_ENZO = 0 so I won't be checking out Enzo INST_PYX = 0 so I won't be installing PyX INST_SCIPY = 0 so I won't be installing scipy INST_0MQ = 1 so I will be installing ZeroMQ INST_ROCKSTAR = 0 so I will be installing Rockstar
-Stephanie
On Wed, Aug 28, 2013 at 9:25 PM, j s oishi <jsoishi@gmail.com> wrote:
Yup, that's exactly where it goes.
j
On Wed, Aug 28, 2013 at 9:24 PM, Stephanie Tonnesen <stonnes@gmail.com>wrote:
Actually, another question then about rerunning a new copy of the install script. Where do I put it to run it again? right now my file structure looks like
/u/stonnes/Installs/yt-x86_64/ bin/ include/ lib/ man/ share/ src/ yt_install.log
do I put the new install_script.sh in Installs/ ?
Thanks again,
Stephanie
On Wed, Aug 28, 2013 at 9:14 PM, Stephanie Tonnesen <stonnes@gmail.com>wrote:
So running yt update --all did not work, unfortunately. It still gives me the error:
ImportError: No module names write_array
Looks like I might have to run a new copy of the install script.
Thanks!
Stephanie
On Wed, Aug 28, 2013 at 4:40 PM, Matthew Turk <matthewturk@gmail.com>wrote:
Hi Stephanie,
Looks to me like write_array is not accessible anymore, which is breaking the "yt" command. (This is a problem we should address.) At worst, you may need to re-run a new copy of the install script; you can do this over top of the old one, or remove and start anew.
We have some packaging plans under way right now that will reduce the importance of the install script and the "yt update" command. But more on that as they are available!
-Matt
On Wed, Aug 28, 2013 at 3:55 PM, Stephanie Tonnesen <stonnes@gmail.com> wrote:
Dear all,
After a pretty long (few month) hiatus, I just tried to update my yt and seem to have broken it.
Now my desktop is frozen so I can't cut and paste the long outputs, but it boils down to:
>yt update
The current version of the code is:
___ 0be45301e0eb (yt) tip ___
This version CAN be automatically updated.
.... added 1740 changesets with 3520 changes to 355 files (+1 heads) Updating the repository 126 files updates, 0 files merged, 0 files removed, 0 files unresolved BROKEN: See /u/stonnes/Installs/yt-x86_64/src/yt-hg/yt_updater.log
So I looked at that
and the first thing it had was: pulling from https://bitbucket.org/yt_analysis/yt/ (run 'hg update' to get a working copy)
So I ran hg update and then it failed and said I had no module named write_array
When I start python2.7
and type >> from yt.mods import *
I get the same error (no module write_array)
Any advice would be appreciated!
Thanks,
Stephanie
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
participants (5)
-
Cameron Hummels -
j s oishi -
Matthew Turk -
Nathan Goldbaum -
Stephanie Tonnesen