Hi Tazkera, It looks like you _don’t_ want the particle files to be loaded, correct? This will probably require a fix to the code to make sure that this doesn’t happen automatically, but in the meantime you could create a folder for the particle files and simply move them in there. This is very hacky, but it will get the job done right now while you wait for a fix (which I’ll try to set up today, but may take several days to get merged into the main branch). How far off are the times in the particle files and plot files? Best, John

On Aug 26, 2016, at 1:40 PM, tazkera haque wrote:

Hi Nathan,

I have just updated yt 3.3 and now I have this weird issue with the scripts , I am uploading my script for sliceplots, which should just analyse the super3d_hdf5_plt_cnt files but I have got issues which also pulls up the super3d_hdf5_part files which are also located in the same path and produces the error.

yt : [INFO ] 2016-08-26 13:23:36,817 Particle file found: super3d_hdf5_part_0000 yt : [INFO ] 2016-08-26 13:23:36,840 integer runtime parameter checkpointfilenumber overwrites a simulation scalar of the same name yt : [INFO ] 2016-08-26 13:23:36,862 Parameters: current_time = 0.0 yt : [INFO ] 2016-08-26 13:23:36,862 Parameters: domain_dimensions = [128 128 128] yt : [INFO ] 2016-08-26 13:23:36,863 Parameters: domain_left_edge = [ -2.80000000e+10 -2.80000000e+10 -2.80000000e+10] yt : [INFO ] 2016-08-26 13:23:36,863 Parameters: domain_right_edge = [ 2.80000000e+10 2.80000000e+10 2.80000000e+10] yt : [INFO ] 2016-08-26 13:23:36,864 Parameters: cosmological_simulation = 0.0 yt : [INFO ] 2016-08-26 13:23:38,500 xlim = -28000000000.000000 28000000000.000000 yt : [INFO ] 2016-08-26 13:23:38,500 ylim = -28000000000.000000 28000000000.000000 yt : [INFO ] 2016-08-26 13:23:38,501 xlim = -28000000000.000000 28000000000.000000 yt : [INFO ] 2016-08-26 13:23:38,501 ylim = -28000000000.000000 28000000000.000000 yt : [INFO ] 2016-08-26 13:23:38,502 Making a fixed resolution buffer of (('flash', 'temp')) 800 by 800 yt : [INFO ] 2016-08-26 13:23:39,016 Making a fixed resolution buffer of (('flash', 'temp')) 800 by 800 yt : [INFO ] 2016-08-26 13:23:39,252 Saving plot Slice_z_temp/super3d_hdf5_plt_cnt_0000_Slice_z_temp.png yt : [INFO ] 2016-08-26 13:23:39,885 Particle file found: super3d_hdf5_part_0001 Traceback (most recent call last): File "allSlices.py", line 115, in <module> ds=yt.load(filename) File "/work/03858/thaque56/sw/yt-new-3.3/yt-conda/lib/python2.7/site-packages/yt/convenience.py", line 86, in load return candidates[0](*args, **kwargs) File "/work/03858/thaque56/sw/yt-new-3.3/yt-conda/lib/python2.7/site-packages/yt/frontends/flash/data_structures.py", line 215, in __init__ raise IOError('%s and %s are not at the same time.' % (self.particle_filename, filename)) IOError: /work/03858/thaque56/runs/run_176/super3d_hdf5_part_0001 and /work/03858/thaque56/runs/run_176/super3d_hdf5_plt_cnt_0001 are not at the same time. [c558-502.stampede.tacc.utexas.edu:mpispawn_0][child_handler] MPI process (rank: 0, pid: 13788) exited with status 1 TACC: MPI job exited with code: 1

Please take a look at the error and let me know how to avoid the particle files in this circumstance.

Best Tazkera

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Ok, so this is clearly a case then were we definitely don’t want to match the files, since they are not designed to be at the same times. I think the fix should be to set a flag to turn this behavior off optionally.

On Aug 26, 2016, at 2:15 PM, tazkera haque wrote:

Hi John,

Thanks for the idea and sounds like a quick fix for now, I will do that.

and our particle files are more frequent than plotfiles, so when there are 50 plt-files there might be 100 part files at that time step.

Best Tazkera

On Fri, Aug 26, 2016 at 3:06 PM, John ZuHone mailto:jzuhone@gmail.com> wrote: Hi Tazkera,

It looks like you _don’t_ want the particle files to be loaded, correct?

This will probably require a fix to the code to make sure that this doesn’t happen automatically, but in the meantime you could create a folder for the particle files and simply move them in there. This is very hacky, but it will get the job done right now while you wait for a fix (which I’ll try to set up today, but may take several days to get merged into the main branch).

How far off are the times in the particle files and plot files?

Best,

John

...

On Aug 26, 2016, at 1:40 PM, tazkera haque mailto:h.tazkera@gmail.com> wrote:

Hi Nathan,

I have just updated yt 3.3 and now I have this weird issue with the scripts , I am uploading my script for sliceplots, which should just analyse the super3d_hdf5_plt_cnt files but I have got issues which also pulls up the super3d_hdf5_part files which are also located in the same path and produces the error.

yt : [INFO ] 2016-08-26 13:23:36,817 Particle file found: super3d_hdf5_part_0000 yt : [INFO ] 2016-08-26 13:23:36,840 integer runtime parameter checkpointfilenumber overwrites a simulation scalar of the same name yt : [INFO ] 2016-08-26 13:23:36,862 Parameters: current_time = 0.0 yt : [INFO ] 2016-08-26 13:23:36,862 Parameters: domain_dimensions = [128 128 128] yt : [INFO ] 2016-08-26 13:23:36,863 Parameters: domain_left_edge = [ -2.80000000e+10 -2.80000000e+10 -2.80000000e+10] yt : [INFO ] 2016-08-26 13:23:36,863 Parameters: domain_right_edge = [ 2.80000000e+10 2.80000000e+10 2.80000000e+10] yt : [INFO ] 2016-08-26 13:23:36,864 Parameters: cosmological_simulation = 0.0 yt : [INFO ] 2016-08-26 13:23:38,500 xlim = -28000000000.000000 28000000000.000000 yt : [INFO ] 2016-08-26 13:23:38,500 ylim = -28000000000.000000 28000000000.000000 yt : [INFO ] 2016-08-26 13:23:38,501 xlim = -28000000000.000000 28000000000.000000 yt : [INFO ] 2016-08-26 13:23:38,501 ylim = -28000000000.000000 28000000000.000000 yt : [INFO ] 2016-08-26 13:23:38,502 Making a fixed resolution buffer of (('flash', 'temp')) 800 by 800 yt : [INFO ] 2016-08-26 13:23:39,016 Making a fixed resolution buffer of (('flash', 'temp')) 800 by 800 yt : [INFO ] 2016-08-26 13:23:39,252 Saving plot Slice_z_temp/super3d_hdf5_plt_cnt_0000_Slice_z_temp.png yt : [INFO ] 2016-08-26 13:23:39,885 Particle file found: super3d_hdf5_part_0001 Traceback (most recent call last): File "allSlices.py", line 115, in <module> ds=yt.load(filename) File "/work/03858/thaque56/sw/yt-new-3.3/yt-conda/lib/python2.7/site-packages/yt/convenience.py", line 86, in load return candidates[0](*args, **kwargs) File "/work/03858/thaque56/sw/yt-new-3.3/yt-conda/lib/python2.7/site-packages/yt/frontends/flash/data_structures.py", line 215, in __init__ raise IOError('%s and %s are not at the same time.' % (self.particle_filename, filename)) IOError: /work/03858/thaque56/runs/run_176/super3d_hdf5_part_0001 and /work/03858/thaque56/runs/run_176/super3d_hdf5_plt_cnt_0001 are not at the same time. [c558-502.stampede.tacc.utexas.edu http://c558-502.stampede.tacc.utexas.edu/:mpispawn_0][child_handler] MPI process (rank: 0, pid: 13788) exited with status 1 TACC: MPI job exited with code: 1

Please take a look at the error and let me know how to avoid the particle files in this circumstance.

Best Tazkera

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