Mailman 3 empty field_list when loading old enzo output (possibly v1.5) - yt-users

empty field_list when loading old enzo output (possibly v1.5)

Wing-Kit Lee

21 Oct 2014 21 Oct '14

6:22 p.m.

Hi all, I have some outputs from an unknown (private) branch of Enzo (possibly as early as version 1.5). I believe there was no big change on the output structure vs actual Enzo 1.5. When loaded it with yt (3.0.2), I got an empty field list. Can someone point me to where I can look at? Thanks a lot! Best, Kit -- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

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Matthew Turk

22 Oct 22 Oct

12:30 a.m.

Hi Kit, If you do something like "ds.index" does that fill in the field list? Matt On Oct 21, 2014 6:01 PM, "Wing-Kit Lee" wrote:

...

Hi all,

I have some outputs from an unknown (private) branch of Enzo (possibly as early as version 1.5). I believe there was no big change on the output structure vs actual Enzo 1.5. When loaded it with yt (3.0.2), I got an empty field list. Can someone point me to where I can look at? Thanks a lot!

Best, Kit

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

Wing-Kit Lee

12:55 a.m.

Hi Matt, No, it only gave And it's a 2D simulation. Kit On Wed, Oct 22, 2014 at 8:30 AM, Matthew Turk wrote:

...

Hi Kit,

If you do something like "ds.index" does that fill in the field list?

Matt On Oct 21, 2014 6:01 PM, "Wing-Kit Lee" wrote:

...
Hi all,

I have some outputs from an unknown (private) branch of Enzo (possibly as early as version 1.5). I believe there was no big change on the output structure vs actual Enzo 1.5. When loaded it with yt (3.0.2), I got an empty field list. Can someone point me to where I can look at? Thanks a lot!

Best, Kit

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

Nathan Goldbaum

12:57 a.m.

Any chance you could share it? Sending a Dropbox or Google drive link to the mailing list is probably the easiest way. Nathan On Tuesday, October 21, 2014, Wing-Kit Lee wrote:

...

Hi Matt,

No, it only gave

And it's a 2D simulation.

Kit

On Wed, Oct 22, 2014 at 8:30 AM, Matthew Turk javascript:_e(%7B%7D,'cvml','matthewturk@gmail.com');> wrote:

...
Hi Kit,

If you do something like "ds.index" does that fill in the field list?

Matt On Oct 21, 2014 6:01 PM, "Wing-Kit Lee" javascript:_e(%7B%7D,'cvml','wklee@asiaa.sinica.edu.tw');> wrote:

...
Hi all,

I have some outputs from an unknown (private) branch of Enzo (possibly as early as version 1.5). I believe there was no big change on the output structure vs actual Enzo 1.5. When loaded it with yt (3.0.2), I got an empty field list. Can someone point me to where I can look at? Thanks a lot!

Best, Kit

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org javascript:_e(%7B%7D,'cvml','yt-users@lists.spacepope.org'); http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org javascript:_e(%7B%7D,'cvml','yt-users@lists.spacepope.org'); http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

Wing-Kit Lee

1:03 a.m.

Hi Nathan, Yes, here is an initial dump: https://drive.google.com/file/d/0ByuoYR0TErsteDRfcGJnYXJwcDQ/view?usp=sharin... Thanks! Kit On Wed, Oct 22, 2014 at 8:57 AM, Nathan Goldbaum wrote:

...

Any chance you could share it?

Sending a Dropbox or Google drive link to the mailing list is probably the easiest way.

Nathan

On Tuesday, October 21, 2014, Wing-Kit Lee wrote:

...
Hi Matt,

No, it only gave

And it's a 2D simulation.

Kit

On Wed, Oct 22, 2014 at 8:30 AM, Matthew Turk wrote:

...
Hi Kit,

If you do something like "ds.index" does that fill in the field list?

Matt On Oct 21, 2014 6:01 PM, "Wing-Kit Lee" wrote:

...
Hi all,

I have some outputs from an unknown (private) branch of Enzo (possibly as early as version 1.5). I believe there was no big change on the output structure vs actual Enzo 1.5. When loaded it with yt (3.0.2), I got an empty field list. Can someone point me to where I can look at? Thanks a lot!

Best, Kit

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

John ZuHone

2:09 a.m.

Kit, Sorry--just for clarification--did you check the field_list again after you did ds.index? John Z John ZuHone Kavli Center for Astrophysics and Space Research Massachusetts Institute of Technology 77 Massachusetts Ave., 37-582G Cambridge, MA 02139 (w) 617-253-2354 (m) 781-708-5004 jzuhone@space.mit.edu jzuhone@gmail.com http://www.jzuhone.com

...

On Oct 21, 2014, at 8:55 PM, Wing-Kit Lee wrote:

Hi Matt,

No, it only gave

And it's a 2D simulation.

Kit

...
On Wed, Oct 22, 2014 at 8:30 AM, Matthew Turk wrote: Hi Kit,

If you do something like "ds.index" does that fill in the field list?

Matt

...
On Oct 21, 2014 6:01 PM, "Wing-Kit Lee" wrote: Hi all,

I have some outputs from an unknown (private) branch of Enzo (possibly as early as version 1.5). I believe there was no big change on the output structure vs actual Enzo 1.5. When loaded it with yt (3.0.2), I got an empty field list. Can someone point me to where I can look at? Thanks a lot!

Best, Kit

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

Wing-Kit Lee

2:18 a.m.

Hi John, No, it returned an empty list, []. Here is what I did: In [2]: ds = yt.load('DD0000/ts2D_512L0E001_0000') yt : [INFO ] 2014-10-22 10:16:30,377 Parameters: current_time = 0 yt : [INFO ] 2014-10-22 10:16:30,378 Parameters: domain_dimensions = [512 512 1] yt : [INFO ] 2014-10-22 10:16:30,380 Parameters: domain_left_edge = [ 0. 0. 0.] yt : [INFO ] 2014-10-22 10:16:30,380 Parameters: domain_right_edge = [ 1. 1. 1.] yt : [INFO ] 2014-10-22 10:16:30,381 Parameters: cosmological_simulation = 0.0 In [3]: ds.field_list yt : [INFO ] 2014-10-22 10:16:35,568 Gathering a field list (this may take a moment.) yt : [INFO ] 2014-10-22 10:16:35,680 Loading field plugins. yt : [INFO ] 2014-10-22 10:16:35,682 Loaded angular_momentum (8 new fields) yt : [INFO ] 2014-10-22 10:16:35,682 Loaded astro (14 new fields) yt : [INFO ] 2014-10-22 10:16:35,682 Loaded cosmology (20 new fields) yt : [INFO ] 2014-10-22 10:16:35,683 Loaded fluid (56 new fields) yt : [INFO ] 2014-10-22 10:16:35,684 Loaded fluid_vector (88 new fields) yt : [INFO ] 2014-10-22 10:16:35,685 Loaded geometric (102 new fields) yt : [INFO ] 2014-10-22 10:16:35,685 Loaded local (102 new fields) yt : [INFO ] 2014-10-22 10:16:35,685 Loaded magnetic_field (108 new fields) yt : [INFO ] 2014-10-22 10:16:35,685 Loaded species (108 new fields) Out[3]: [] In [4]: ds.index Out[4]: In [5]: ds.field_list Out[5]: [] ------------------------------------ Kit On Wed, Oct 22, 2014 at 10:09 AM, John ZuHone wrote:

...

Kit,

Sorry--just for clarification--did you check the field_list again after you did ds.index?

John Z

John ZuHone Kavli Center for Astrophysics and Space Research Massachusetts Institute of Technology 77 Massachusetts Ave., 37-582G Cambridge, MA 02139 (w) 617-253-2354 (m) 781-708-5004 jzuhone@space.mit.edu jzuhone@gmail.com http://www.jzuhone.com

On Oct 21, 2014, at 8:55 PM, Wing-Kit Lee wrote:

Hi Matt,

No, it only gave

And it's a 2D simulation.

Kit

On Wed, Oct 22, 2014 at 8:30 AM, Matthew Turk wrote:

...
Hi Kit,

If you do something like "ds.index" does that fill in the field list?

Matt On Oct 21, 2014 6:01 PM, "Wing-Kit Lee" wrote:

...
Hi all,

I have some outputs from an unknown (private) branch of Enzo (possibly as early as version 1.5). I believe there was no big change on the output structure vs actual Enzo 1.5. When loaded it with yt (3.0.2), I got an empty field list. Can someone point me to where I can look at? Thanks a lot!

Best, Kit

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

Nathan Goldbaum

9:19 p.m.

Hi Kit, I've issue a pull request here that should allow you to read your data in: https://bitbucket.org/yt_analysis/yt/pull-request/1282/improving-support-for... If you could test that, I'd appreciate it. -Nathan On Tue, Oct 21, 2014 at 7:18 PM, Wing-Kit Lee wrote:

...

Hi John,

No, it returned an empty list, [].

Here is what I did:

In [2]: ds = yt.load('DD0000/ts2D_512L0E001_0000') yt : [INFO ] 2014-10-22 10:16:30,377 Parameters: current_time = 0 yt : [INFO ] 2014-10-22 10:16:30,378 Parameters: domain_dimensions = [512 512 1] yt : [INFO ] 2014-10-22 10:16:30,380 Parameters: domain_left_edge = [ 0. 0. 0.] yt : [INFO ] 2014-10-22 10:16:30,380 Parameters: domain_right_edge = [ 1. 1. 1.] yt : [INFO ] 2014-10-22 10:16:30,381 Parameters: cosmological_simulation = 0.0

In [3]: ds.field_list yt : [INFO ] 2014-10-22 10:16:35,568 Gathering a field list (this may take a moment.) yt : [INFO ] 2014-10-22 10:16:35,680 Loading field plugins. yt : [INFO ] 2014-10-22 10:16:35,682 Loaded angular_momentum (8 new fields) yt : [INFO ] 2014-10-22 10:16:35,682 Loaded astro (14 new fields) yt : [INFO ] 2014-10-22 10:16:35,682 Loaded cosmology (20 new fields) yt : [INFO ] 2014-10-22 10:16:35,683 Loaded fluid (56 new fields) yt : [INFO ] 2014-10-22 10:16:35,684 Loaded fluid_vector (88 new fields) yt : [INFO ] 2014-10-22 10:16:35,685 Loaded geometric (102 new fields) yt : [INFO ] 2014-10-22 10:16:35,685 Loaded local (102 new fields) yt : [INFO ] 2014-10-22 10:16:35,685 Loaded magnetic_field (108 new fields) yt : [INFO ] 2014-10-22 10:16:35,685 Loaded species (108 new fields) Out[3]: []

In [4]: ds.index Out[4]:

In [5]: ds.field_list Out[5]: []

------------------------------------

Kit

On Wed, Oct 22, 2014 at 10:09 AM, John ZuHone wrote:

...
Kit,

Sorry--just for clarification--did you check the field_list again after you did ds.index?

John Z

John ZuHone Kavli Center for Astrophysics and Space Research Massachusetts Institute of Technology 77 Massachusetts Ave., 37-582G Cambridge, MA 02139 (w) 617-253-2354 (m) 781-708-5004 jzuhone@space.mit.edu jzuhone@gmail.com http://www.jzuhone.com

On Oct 21, 2014, at 8:55 PM, Wing-Kit Lee wrote:

Hi Matt,

No, it only gave

And it's a 2D simulation.

Kit

On Wed, Oct 22, 2014 at 8:30 AM, Matthew Turk wrote:

...
Hi Kit,

If you do something like "ds.index" does that fill in the field list?

Matt On Oct 21, 2014 6:01 PM, "Wing-Kit Lee" wrote:

...
Hi all,

I have some outputs from an unknown (private) branch of Enzo (possibly as early as version 1.5). I believe there was no big change on the output structure vs actual Enzo 1.5. When loaded it with yt (3.0.2), I got an empty field list. Can someone point me to where I can look at? Thanks a lot!

Best, Kit

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

Wing-Kit Lee

23 Oct 23 Oct

3:50 p.m.

Hi Nathan, I have no problem reading the data so far. Thanks for you time!! Kit On Thu, Oct 23, 2014 at 5:19 AM, Nathan Goldbaum wrote:

...

Hi Kit,

I've issue a pull request here that should allow you to read your data in:

https://bitbucket.org/yt_analysis/yt/pull-request/1282/improving-support-for...

If you could test that, I'd appreciate it.

-Nathan

On Tue, Oct 21, 2014 at 7:18 PM, Wing-Kit Lee wrote:

...
Hi John,

No, it returned an empty list, [].

Here is what I did:

In [2]: ds = yt.load('DD0000/ts2D_512L0E001_0000') yt : [INFO ] 2014-10-22 10:16:30,377 Parameters: current_time = 0 yt : [INFO ] 2014-10-22 10:16:30,378 Parameters: domain_dimensions = [512 512 1] yt : [INFO ] 2014-10-22 10:16:30,380 Parameters: domain_left_edge = [ 0. 0. 0.] yt : [INFO ] 2014-10-22 10:16:30,380 Parameters: domain_right_edge = [ 1. 1. 1.] yt : [INFO ] 2014-10-22 10:16:30,381 Parameters: cosmological_simulation = 0.0

In [3]: ds.field_list yt : [INFO ] 2014-10-22 10:16:35,568 Gathering a field list (this may take a moment.) yt : [INFO ] 2014-10-22 10:16:35,680 Loading field plugins. yt : [INFO ] 2014-10-22 10:16:35,682 Loaded angular_momentum (8 new fields) yt : [INFO ] 2014-10-22 10:16:35,682 Loaded astro (14 new fields) yt : [INFO ] 2014-10-22 10:16:35,682 Loaded cosmology (20 new fields) yt : [INFO ] 2014-10-22 10:16:35,683 Loaded fluid (56 new fields) yt : [INFO ] 2014-10-22 10:16:35,684 Loaded fluid_vector (88 new fields) yt : [INFO ] 2014-10-22 10:16:35,685 Loaded geometric (102 new fields) yt : [INFO ] 2014-10-22 10:16:35,685 Loaded local (102 new fields) yt : [INFO ] 2014-10-22 10:16:35,685 Loaded magnetic_field (108 new fields) yt : [INFO ] 2014-10-22 10:16:35,685 Loaded species (108 new fields) Out[3]: []

In [4]: ds.index Out[4]:

In [5]: ds.field_list Out[5]: []

------------------------------------

Kit

On Wed, Oct 22, 2014 at 10:09 AM, John ZuHone wrote:

...
Kit,

Sorry--just for clarification--did you check the field_list again after you did ds.index?

John Z

John ZuHone Kavli Center for Astrophysics and Space Research Massachusetts Institute of Technology 77 Massachusetts Ave., 37-582G Cambridge, MA 02139 (w) 617-253-2354 (m) 781-708-5004 jzuhone@space.mit.edu jzuhone@gmail.com http://www.jzuhone.com

On Oct 21, 2014, at 8:55 PM, Wing-Kit Lee wrote:

Hi Matt,

No, it only gave

And it's a 2D simulation.

Kit

On Wed, Oct 22, 2014 at 8:30 AM, Matthew Turk wrote:

...
Hi Kit,

If you do something like "ds.index" does that fill in the field list?

Matt On Oct 21, 2014 6:01 PM, "Wing-Kit Lee" wrote:

...
Hi all,

I have some outputs from an unknown (private) branch of Enzo (possibly as early as version 1.5). I believe there was no big change on the output structure vs actual Enzo 1.5. When loaded it with yt (3.0.2), I got an empty field list. Can someone point me to where I can look at? Thanks a lot!

Best, Kit

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

-- Wing Kit Lee Postdoc Fellow Academia Sinica, Institute of Astronomy and Astrophysics

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John ZuHone
Matthew Turk
Nathan Goldbaum
Wing-Kit Lee

empty field_list when loading old enzo output (possibly v1.5)

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