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Mark Kremenetsky

31 Jan 2013 31 Jan '13

2:29 a.m.

Guys, I am using a script recommended on ENZO boot-camp page $ bash install_script.sh in order to set up all libraries needed for enzo compilation. Everything is going good and well until I got a following error: gcc -fPIC -c bzip2.c In file included from /usr/include/errno.h:36, from bzip2.c:55: /usr/include/bits/errno.h:25:26: error: linux/errno.h: No such file or directory make: *** [bzip2.o] Error 1 I checked and certainly I don't have such thing as /usr/include/linux/errno.h Any advice ? Thanks, Mark

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Peter Teuben

31 Jan 31 Jan

2:34 a.m.

On 01/30/2013 03:59 PM, Mark Kremenetsky wrote:

Guys, I am using a script recommended on ENZO boot-camp page

$ bash install_script.sh

in order to set up all libraries needed for enzo compilation. Everything is going good and well until I got a following error:

gcc -fPIC -c bzip2.c In file included from /usr/include/errno.h:36, from bzip2.c:55: /usr/include/bits/errno.h:25:26: error: linux/errno.h: No such file or directory make: *** [bzip2.o] Error 1 I checked and certainly I don't have such thing as /usr/include/linux/errno.h

Any advice ?

on ubuntu you can do % dpkg -S /usr/include/linux/errno.h linux-libc-dev: /usr/include/linux/errno.h so you need to have that "dev" package installed. For other distro's it might have a different name. If this is your first time installing it, you might wind up needing more of these development packages for some of the libraries. I've seen quite a few packages give their developers a nice list of how to update their system, something like sudo apt-get install linux-libc-dev ..... peter

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Nathan Goldbaum

2:51 a.m.

And in fact, on Ubuntu the install script will spit out exactly which packages it needs: https://bitbucket.org/yt_analysis/yt/src/0514b030f6479c0adb75df5bf3da7ab7310... It would help to figure out exactly which libraries and packages are needed if you're running a different distribution or a different flavor of UNIX. If this is a shared computer or cluster and you don't have root access it should be possible to get this working but it will probably be a bit more complicated. Cheers, Nathan On Jan 30, 2013, at 1:04 PM, Peter Teuben wrote: On 01/30/2013 03:59 PM, Mark Kremenetsky wrote: Guys, I am using a script recommended on ENZO boot-camp page $ bash install_script.sh in order to set up all libraries needed for enzo compilation. Everything is going good and well until I got a following error: gcc -fPIC -c bzip2.c In file included from /usr/include/errno.h:36, from bzip2.c:55: /usr/include/bits/errno.h:25:26: error: linux/errno.h: No such file or directory make: *** [bzip2.o] Error 1 I checked and certainly I don't have such thing as /usr/include/linux/errno.h Any advice ? on ubuntu you can do % dpkg -S /usr/include/linux/errno.h linux-libc-dev: /usr/include/linux/errno.h so you need to have that "dev" package installed. For other distro's it might have a different name. If this is your first time installing it, you might wind up needing more of these development packages for some of the libraries. I've seen quite a few packages give their developers a nice list of how to update their system, something like sudo apt-get install linux-libc-dev ..... peter _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

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Mark Kremenetsky

3:01 a.m.

I have to apologize for not providing OS version that I am running on my system It is SUSE Linux Enterprise Server 11 (x86_64) VERSION = 11 PATCHLEVEL = 2 Mark On 01/30/2013 01:21 PM, Nathan Goldbaum wrote:

And in fact, on Ubuntu the install script will spit out exactly which packages it needs:

https://bitbucket.org/yt_analysis/yt/src/0514b030f6479c0adb75df5bf3da7ab7310...

It would help to figure out exactly which libraries and packages are needed if you're running a different distribution or a different flavor of UNIX.

If this is a shared computer or cluster and you don't have root access it should be possible to get this working but it will probably be a bit more complicated.

Cheers,

Nathan

On Jan 30, 2013, at 1:04 PM, Peter Teuben mailto:teuben@astro.umd.edu> wrote:

...
On 01/30/2013 03:59 PM, Mark Kremenetsky wrote:

...
Guys, I am using a script recommended on ENZO boot-camp page

$ bash install_script.sh

in order to set up all libraries needed for enzo compilation. Everything is going good and well until I got a following error:

gcc -fPIC -c bzip2.c In file included from /usr/include/errno.h:36, from bzip2.c:55: /usr/include/bits/errno.h:25:26: error: linux/errno.h: No such file or directory make: *** [bzip2.o] Error 1 I checked and certainly I don't have such thing as /usr/include/linux/errno.h

Any advice ?

on ubuntu you can do

% dpkg -S /usr/include/linux/errno.h linux-libc-dev: /usr/include/linux/errno.h

so you need to have that "dev" package installed. For other distro's it might have a different name. If this is your first time installing it, you might wind up needing more of these development packages for some of the libraries.

I've seen quite a few packages give their developers a nice list of how to update their system, something like

sudo apt-get install linux-libc-dev .....

peter

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Peter Teuben

4:06 a.m.

of course if you don't have the file you can't use this trick, but the command rpm -qf /usr/include/linux/errno.h would give you the same result as that beforementioned ubuntu example, namely which package you need. I have a SL63 here, whihc is also a redhat derivative, so perhaps close enoiugh to your SUSE. And it responded with kernel-headers-2.6.32-279.19.1.el6.x86_64 which is quite different from my linux-libc-dev. Anyways, maybe you can list your packages with rpm -qa | grep kernel and see if you have something like it On 01/30/2013 04:31 PM, Mark Kremenetsky wrote:

I have to apologize for not providing OS version that I am running on my system It is SUSE Linux Enterprise Server 11 (x86_64) VERSION = 11 PATCHLEVEL = 2 Mark

On 01/30/2013 01:21 PM, Nathan Goldbaum wrote:

...
And in fact, on Ubuntu the install script will spit out exactly which packages it needs:

https://bitbucket.org/yt_analysis/yt/src/0514b030f6479c0adb75df5bf3da7ab7310...

It would help to figure out exactly which libraries and packages are needed if you're running a different distribution or a different flavor of UNIX.

If this is a shared computer or cluster and you don't have root access it should be possible to get this working but it will probably be a bit more complicated.

Cheers,

Nathan

On Jan 30, 2013, at 1:04 PM, Peter Teuben mailto:teuben@astro.umd.edu> wrote:

...
On 01/30/2013 03:59 PM, Mark Kremenetsky wrote:

...
Guys, I am using a script recommended on ENZO boot-camp page

$ bash install_script.sh

in order to set up all libraries needed for enzo compilation. Everything is going good and well until I got a following error:

gcc -fPIC -c bzip2.c In file included from /usr/include/errno.h:36, from bzip2.c:55: /usr/include/bits/errno.h:25:26: error: linux/errno.h: No such file or directory make: *** [bzip2.o] Error 1 I checked and certainly I don't have such thing as /usr/include/linux/errno.h

Any advice ?

on ubuntu you can do

% dpkg -S /usr/include/linux/errno.h linux-libc-dev: /usr/include/linux/errno.h

so you need to have that "dev" package installed. For other distro's it might have a different name. If this is your first time installing it, you might wind up needing more of these development packages for some of the libraries.

I've seen quite a few packages give their developers a nice list of how to update their system, something like

sudo apt-get install linux-libc-dev .....

peter

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_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

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Matthew Turk

6 Feb 6 Feb

3:21 a.m.

Hi all, I wanted to briefly revisit this discussion, as we're in the process of updating the install script to add more tips for distributions. I was wondering if anybody narrowed down the right set of RPMs / etc to install? I'd like to put them in; it's been a while since I've used SUSE but I think we're going to be getting more and more people using it. And thanks for the helpful tip, Peter! I didn't know about rpm -qf or -qa, but now I've put them in my notes file ... :) -Matt On Wed, Jan 30, 2013 at 2:36 PM, Peter Teuben wrote:

of course if you don't have the file you can't use this trick, but the command

rpm -qf /usr/include/linux/errno.h

would give you the same result as that beforementioned ubuntu example, namely which package you need. I have a SL63 here, whihc is also a redhat derivative, so perhaps close enoiugh to your SUSE. And it responded with

kernel-headers-2.6.32-279.19.1.el6.x86_64

which is quite different from my linux-libc-dev. Anyways, maybe you can list your packages with

rpm -qa | grep kernel

and see if you have something like it

On 01/30/2013 04:31 PM, Mark Kremenetsky wrote:

I have to apologize for not providing OS version that I am running on my system It is SUSE Linux Enterprise Server 11 (x86_64) VERSION = 11 PATCHLEVEL = 2 Mark

On 01/30/2013 01:21 PM, Nathan Goldbaum wrote:

And in fact, on Ubuntu the install script will spit out exactly which packages it needs:

https://bitbucket.org/yt_analysis/yt/src/0514b030f6479c0adb75df5bf3da7ab7310...

It would help to figure out exactly which libraries and packages are needed if you're running a different distribution or a different flavor of UNIX.

If this is a shared computer or cluster and you don't have root access it should be possible to get this working but it will probably be a bit more complicated.

Cheers,

Nathan

On Jan 30, 2013, at 1:04 PM, Peter Teuben wrote:

On 01/30/2013 03:59 PM, Mark Kremenetsky wrote:

Guys,

I am using a script recommended on ENZO boot-camp page

$ bash install_script.sh

in order to set up all libraries needed for enzo compilation.

Everything is going good and well until I got a following error:

gcc -fPIC -c bzip2.c

In file included from /usr/include/errno.h:36,

from bzip2.c:55:

/usr/include/bits/errno.h:25:26: error: linux/errno.h: No such file or

directory

make: *** [bzip2.o] Error 1

I checked and certainly I don't have such thing as

/usr/include/linux/errno.h

Any advice ?

on ubuntu you can do

% dpkg -S /usr/include/linux/errno.h linux-libc-dev: /usr/include/linux/errno.h

so you need to have that "dev" package installed. For other distro's it might have a different name. If this is your first time installing it, you might wind up needing more of these development packages for some of the libraries.

I've seen quite a few packages give their developers a nice list of how to update their system, something like

sudo apt-get install linux-libc-dev .....

peter

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

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Peter Teuben

5:45 a.m.

all, FWIW, I'm now adding small text files to my own package, so in theory all the user has to do is something like yum install `cat linux/fedora17` or apt-get install `cat linux/ubuntu12.04` it seems within distro's the package names don't change much. I imagine we could come up with a similar mechanism for those we link Fink or MacPorts on the mac. peter On 02/05/2013 04:51 PM, Matthew Turk wrote:

Hi all,

I wanted to briefly revisit this discussion, as we're in the process of updating the install script to add more tips for distributions. I was wondering if anybody narrowed down the right set of RPMs / etc to install? I'd like to put them in; it's been a while since I've used SUSE but I think we're going to be getting more and more people using it. And thanks for the helpful tip, Peter! I didn't know about rpm -qf or -qa, but now I've put them in my notes file ... :)

-Matt

On Wed, Jan 30, 2013 at 2:36 PM, Peter Teuben wrote:

...
of course if you don't have the file you can't use this trick, but the command

rpm -qf /usr/include/linux/errno.h

would give you the same result as that beforementioned ubuntu example, namely which package you need. I have a SL63 here, whihc is also a redhat derivative, so perhaps close enoiugh to your SUSE. And it responded with

kernel-headers-2.6.32-279.19.1.el6.x86_64

which is quite different from my linux-libc-dev. Anyways, maybe you can list your packages with

rpm -qa | grep kernel

and see if you have something like it

On 01/30/2013 04:31 PM, Mark Kremenetsky wrote:

I have to apologize for not providing OS version that I am running on my system It is SUSE Linux Enterprise Server 11 (x86_64) VERSION = 11 PATCHLEVEL = 2 Mark

On 01/30/2013 01:21 PM, Nathan Goldbaum wrote:

And in fact, on Ubuntu the install script will spit out exactly which packages it needs:

https://bitbucket.org/yt_analysis/yt/src/0514b030f6479c0adb75df5bf3da7ab7310...

It would help to figure out exactly which libraries and packages are needed if you're running a different distribution or a different flavor of UNIX.

If this is a shared computer or cluster and you don't have root access it should be possible to get this working but it will probably be a bit more complicated.

Cheers,

Nathan

On Jan 30, 2013, at 1:04 PM, Peter Teuben wrote:

On 01/30/2013 03:59 PM, Mark Kremenetsky wrote:

Guys,

I am using a script recommended on ENZO boot-camp page

$ bash install_script.sh

in order to set up all libraries needed for enzo compilation.

Everything is going good and well until I got a following error:

gcc -fPIC -c bzip2.c

In file included from /usr/include/errno.h:36,

from bzip2.c:55:

/usr/include/bits/errno.h:25:26: error: linux/errno.h: No such file or

directory

make: *** [bzip2.o] Error 1

I checked and certainly I don't have such thing as

/usr/include/linux/errno.h

Any advice ?

on ubuntu you can do

% dpkg -S /usr/include/linux/errno.h linux-libc-dev: /usr/include/linux/errno.h

so you need to have that "dev" package installed. For other distro's it might have a different name. If this is your first time installing it, you might wind up needing more of these development packages for some of the libraries.

I've seen quite a few packages give their developers a nice list of how to update their system, something like

sudo apt-get install linux-libc-dev .....

peter

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

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Mark Kremenetsky
Matthew Turk
Nathan Goldbaum
Peter Teuben