Still having issues with parallel yt on STAMPEDE
Hello all, I still can’t get parallel yt running… please pass along any ideas… I’ve got the ipcluster running ok … yt 3.1 going — but I’m still getting "AttributeError: 'module' object has no attribute ‘utilities’” when trying to load a RAMSES output file… Here’s the cluster running.. 11:14:02 earnric /home1/02744/earnric $ ipcluster start --engines=MPI … 2015-01-20 23:14:10.653 [IPClusterStart] Starting 16 Engines with MPI 2015-01-20 23:14:40.657 [IPClusterStart] Engines appear to have started successfully Here are the modules loaded: 11:21:47 earnric /home1/02744/earnric $ module list Currently Loaded Modules: 1) TACC-paths 3) cluster-paths 5) cluster 7) intel/14.0.1.106 9) python/2.7.6 2) Linux 4) xalt/0.4.6 6) TACC 8) mvapich2/2.0b 10) hdf5/1.8.13 and my ENVs: 11:22:13 earnric /home1/02744/earnric $ echo $PYTHONPATH /home1/02744/earnric/.local/lib/python2.7/site-packages/:/opt/apps/intel14/mvapich2_2_0/python/2.7.6/lib/python2.7/site-packages: 11:22:23 earnric /home1/02744/earnric $ echo $PATH /home1/02744/earnric/.local/bin:/home1/02744/earnric/bin:/opt/apps/intel14/hdf5/1.8.13/x86_64/bin:/opt/apps/intel14/mvapich2_2_0/python/2.7.6/bin:/opt/apps/intel14/mvapich2/2.0b/bin:/opt/apps/intel/13/vtune_amplifier_xe_2013/bin64:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mpirt/bin/intel64:/opt/intel/sep/bin:/opt/apps/xalt/0.4.6/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/opt/ofed/bin:/opt/ofed/sbin:.:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/bin/intel64:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/bin/intel64_mic:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/debugger/gui/intel64 11:22:31 earnric /home1/02744/earnric $ echo $LD_LIBRARY_PATH /opt/apps/intel14/mvapich2_2_0/python/2.7.6/lib:/opt/apps/intel14/mvapich2/2.0b/lib:/opt/apps/intel14/mvapich2/2.0b/lib/shared:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/tbb/lib/intel64:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64:/opt/intel/mic/coi/host-linux-release/lib:/opt/intel/mic/myo/lib:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mpirt/lib/intel64:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/ipp/../compiler/lib/intel64:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/ipp/lib/intel64:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/tbb/lib/intel64 Here’s what I’m seeing — if you have any ideas I’d appreciate it: In [1]: from IPython.parallel import Client rc = Client() In [2]: rc.ids Out[2]: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15] In [3]: %autopx %autopx enabled In [4]: from mpi4py import MPI MPI.COMM_WORLD.Get_rank() Out[0:1]: 8 Out[1:1]: 12 Out[2:1]: 9 Out[3:1]: 6 Out[4:1]: 10 Out[5:1]: 1 Out[6:1]: 2 Out[7:1]: 11 Out[8:1]: 13 Out[9:1]: 5 Out[10:1]: 3 Out[11:1]: 14 Out[12:1]: 7 Out[13:1]: 0 Out[14:1]: 15 Out[15:1]: 4 In [7]: import yt yt.enable_parallelism() import numpy as np import os import shutil import h5py import gc import glob [0:execute]: --------------------------------------------------------------------------- AttributeError Traceback (most recent call last)<ipython-input-4-34dfdffceb1e> in <module>() ----> 1 import yt 2 yt.enable_parallelism() 3 import numpy as np 4 import os 5 import shutil /home1/02744/earnric/.local/lib/python2.7/site-packages/yt-3.1dev-py2.7-linux-x86_64.egg/yt/__init__.py in <module>() 97 from yt.utilities.logger import ytLogger as mylog 98 ---> 99 import yt.utilities.physical_constants as physical_constants 100 import yt.units as units 101 from yt.units.yt_array import \ AttributeError: 'module' object has no attribute 'utilities' [1:execute]: --------------------------------------------------------------------------- AttributeError Traceback (most recent call last)<ipython-input-4-34dfdffceb1e> in <module>() ----> 1 import yt 2 yt.enable_parallelism() 3 import numpy as np 4 import os 5 import shutil /home1/02744/earnric/.local/lib/python2.7/site-packages/yt-3.1dev-py2.7-linux-x86_64.egg/yt/__init__.py in <module>() 97 from yt.utilities.logger import ytLogger as mylog 98 ---> 99 import yt.utilities.physical_constants as physical_constants 100 import yt.units as units 101 from yt.units.yt_array import \ AttributeError: 'module' object has no attribute 'utilities' [2:execute]: --------------------------------------------------------------------------- AttributeError Traceback (most recent call last)<ipython-input-4-34dfdffceb1e> in <module>() ----> 1 import yt 2 yt.enable_parallelism() 3 import numpy as np 4 import os 5 import shutil /home1/02744/earnric/.local/lib/python2.7/site-packages/yt-3.1dev-py2.7-linux-x86_64.egg/yt/__init__.py in <module>() 97 from yt.utilities.logger import ytLogger as mylog 98 ---> 99 import yt.utilities.physical_constants as physical_constants 100 import yt.units as units 101 from yt.units.yt_array import \ AttributeError: 'module' object has no attribute 'utilities' [3:execute]: --------------------------------------------------------------------------- AttributeError Traceback (most recent call last)<ipython-input-4-34dfdffceb1e> in <module>() ----> 1 import yt 2 yt.enable_parallelism() 3 import numpy as np 4 import os 5 import shutil /home1/02744/earnric/.local/lib/python2.7/site-packages/yt-3.1dev-py2.7-linux-x86_64.egg/yt/__init__.py in <module>() 97 from yt.utilities.logger import ytLogger as mylog 98 ---> 99 import yt.utilities.physical_constants as physical_constants 100 import yt.units as units 101 from yt.units.yt_array import \ AttributeError: 'module' object has no attribute 'utilities' ... 12 more exceptions ... Cheers! Rick Sarmento SESE Astronomy/Astrophysics Grad Student rsarment@asu.edu _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
participants (1)
-
Rick Sarmento