From thomas.f.hahn2 at gmail.com  Sun Jan  4 04:27:57 2015
From: thomas.f.hahn2 at gmail.com (thomas hahn)
Date: Sat, 3 Jan 2015 21:27:57 -0600
Subject: [EuroPython] Help with finding tutors for Python, Linux, R, Perl,
 Octave, MATLAB and/or Cytoscape for yeast microarray analysis,
 next generation sequencing and constructing gene interaction networks
Message-ID: <CAKJ67ZUT-w2F9shbr-5EmCNYoQ94-SpBoe4+C4Mr3zeN499Tvw@mail.gmail.com>

*Help with finding tutors for Python, Linux, R, Perl, Octave, MATLAB and/or
Cytoscape for yeast microarray analysis, next generation sequencing and
constructing gene interaction networks*



Hi



I am a visually impaired bioinformatics graduate student using microarray
data for my master?s thesis aimed at deciphering the mechanism by which the
yeast wild type can suppress the rise of free reactive oxygen species (ROS)
induced by caloric restriction (CR) but the Atg15 and Erg6 knockout mutant
cannot.



Since my remaining vision is very limited I need very high magnification.
But that makes my visual field very small.  Therefore I need somebody to
teach me how to use these programming environments, especially for
microarray analysis, next generation sequencing and constructing gene and
pathway interaction networks.  This is very difficult for me to figure out
without assistance because Zoomtext, my magnification and text to speech
software, on which I am depending because I am almost blind, has problems
reading out aloud many programming related websites to me.  And even those
websites it can read, it can only read sequentially from left to right and
then from top to bottom.  Unfortunately, this way of acquiring, finding,
selecting and processing new information and answering questions is too
tiresome, exhausting, ineffective and especially way too time consuming for
graduating with a PhD in bioinformatics before my funding runs out despite
being severely limited by my visual disability.  I would also need help
with writing a good literature review and applying the described techniques
to my own yeast Affimetrix microarray dataset because I cannot see well
enough to find all relevant publications on my own.



Some examples for specific tasks I urgently need help with are:



1.    Analyzing and comparing the three publically available microarray
datasets that can be accessed at:

A.    http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE41860

B.    http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38635

C.   http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE9217



2.    Learning how to use the Affymetrics microarray analysis software for
the Yeast 2 chip, which can be found at
http://www.affymetrix.com/support/technical/libraryfilesmain.affx



3.    For Cytoscape I need somebody, who can teach me how to execute the
tutorials at the following links because due to my very limited vision
field I cannot see tutorial and program interface simultaneously.

A.
http://opentutorials.cgl.ucsf.edu/index.php/Tutorial:Introduction_to_Cytoscape_3.1-part2#Importing_and_Exploring_Your_Data

B.
http://opentutorials.cgl.ucsf.edu/index.php/Tutorial:Filtering_and_Editing_in_Cytoscape_3

C.
http://cytoscape.org/manual/Cytoscape2_8Manual.html#Import%20Fixed-Format%20Network%20Files

D.   http://wiki.cytoscape.org/Cytoscape_User_Manual/Network_Formats



4.    Learning how to use the TopGo R package to perform statistical
analysis on GO enrichments.



Since I am legally blind the rehab agency is giving me money to pay tutors
for this purpose.  Could you please help me getting in touch regarding this
with anybody, who could potentially be interested in teaching me one on one
thus saving me time for acquiring new information and skills, which I need
to finish my thesis on time, so that I can remain eligible for funding to
continue in my bioinformatics PhD program despite being almost blind?  The
tutoring can be done remotely via TeamViewer 5 and Skype.  Hence, it does
not matter where my tutors are physically located.  Currently I have tutors
in Croatia and UK.  But since they both work full time jobs while working
on their PhD dissertation they only have very limited time to teach me
online.  Could you therefore please forward this request for help to
anybody, who could potentially be interested or, who could connect me to
somebody, who might be, because my graduation and career depend on it?  Who
else would you recommend me to contact regarding this?  Where else could I
post this because I am in urgent need for help?



Could you please contact me directly via email at Thomas.F.Hahn2 at gmail.com
and/or Skype at tfh002 because my text to speech software has problems to
read out this website aloud to me?

I thank you very much in advance for your thoughts, ideas, suggestions,
recommendations, time, help, efforts and support.

With very warm regards,



*Thomas Hahn*

1)    *Graduate student in the Joint Bioinformatics Program at the
University of Arkansas at Little Rock (UALR) and the University of Arkansas
Medical Sciences (UAMS) &*

2)    *Research & Industry Advocate, Founder and Board Member of RADISH
MEDICAL SOLUTIONS, INC. (**http://www.radishmedical.com/thomas-hahn/*
<http://www.radishmedical.com/thomas-hahn/>*) *



*Primary email: **Thomas.F.Hahn2 at gmail.com* <Thomas.F.Hahn2 at gmail.com>

*Cell phone: 318 243 3940*

*Office phone: 501 682 1440*

*Office location: EIT 535*

*Skype ID: tfh002*

*Virtual Google Voice phone to reach me while logged into my email (i.e. *
*Thomas.F.Hahn2 at gmail.com* <Thomas.F.Hahn2 at gmail.com>*), even when having
no cell phone reception, e.g. in big massive buildings:  *(501) 301-4890
<%28501%29%20301-4890>



*Web links: *



1)      https://ualr.academia.edu/ThomasHahn

2)      https://www.linkedin.com/pub/thomas-hahn/42/b29/42

3)      http://facebook.com/Thomas.F.Hahn
<https://www.facebook.com/Thomas.F.Hahn>

4)      https://twitter.com/Thomas_F_Hahn
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From mal at europython.eu  Thu Jan 15 14:09:05 2015
From: mal at europython.eu (M.-A. Lemburg)
Date: Thu, 15 Jan 2015 14:09:05 +0100
Subject: [EuroPython] EuroPython 2015: Come join us from July 20-26 in
	Bilbao !
Message-ID: <54B7BBF1.6060505@europython.eu>

We are happy to announce the dates for EuroPython 2015 in Bilbao, Spain,
this year:

                   Monday, July 20 - Sunday, July 26


Please mark your calendar. We?d love to meet you all in Bilbao - and hey,
it?s summer, so you might want to combine the conference with a holiday :-)

For updates, please watch our blog at http://blog.europython.eu/.

Enjoy,
?
EuroPython Society (EPS) - http://www.europython-society.org/
Asociaci?n de Ciencias de la Computaci?n Python San Sebasti?n (ACPySS)
- http://www.pyss.org/


PS: Please help spread the word and forward this email to all your local
lists, user groups, etc. Many thanks !

From mal at europython.eu  Fri Jan 16 11:56:38 2015
From: mal at europython.eu (M.-A. Lemburg)
Date: Fri, 16 Jan 2015 11:56:38 +0100
Subject: [EuroPython] EuroPython 2015: Your chance to sign up as a launch
	sponsor
Message-ID: <54B8EE66.2030902@europython.eu>

Companies who would like to sign up as a EuroPython 2015 launch sponsor
are encouraged to contact the sponsor work group at:

                        sponsoring at europython.eu

Launch sponsors will get the additional benefit of being listed on the
website when we launch - for free. You just need to be quick, since the
launch is planned for early in February.

More Booths and more Sponsor Slots
----------------------------------

The Euskalduna Conference Center and Concert Hall (ECC) venue in Bilbao
was chosen as conference venue for EuroPython 2015:

    http://www.euskalduna.net/Index.asp?idioma=en

It offers plenty of room for sponsor booths, so we will try to make
EuroPython 2015 as effective as possible for you as sponsors by offering
more booth space and sponsor slots than ever before:

    http://www.euskalduna.net/espacios/espacios_hall_exposiciones.asp

This is your chance to reach out to more than a thousand enthusiastic
and highly motivated EuroPython attendees !

Please email us at sponsoring at europython.eu and we?ll send you the
sponsor brochure.

Thanks,
?
EuroPython Society (EPS)
http://www.europython-society.org/

PS: Please help spread the word and forward this email to companies
you know, your local lists, user groups, etc. Many thanks !

From mal at europython.eu  Sat Jan 17 12:21:49 2015
From: mal at europython.eu (M.-A. Lemburg)
Date: Sat, 17 Jan 2015 12:21:49 +0100
Subject: [EuroPython] EuroPython 2015: Landing in Bilbao
Message-ID: <54BA45CD.1060703@europython.eu>

After a creative and inspiring Friday afternoon, we are pleased to
announce our EuroPython 2015 landing page:

                      http://ep2015.europython.eu/

This will be the URL for EuroPython 2015 - definitely worth a
bookmark, we think :-)

Enjoy,
-?
EuroPython Society (EPS)
http://www.europython-society.org/

From joachim at valbonne-consulting.com  Fri Jan 23 02:52:40 2015
From: joachim at valbonne-consulting.com (Joachim)
Date: Fri, 23 Jan 2015 01:52:40 +0000 (UTC)
Subject: [EuroPython] [Off-Topic][Python job opportunity] looking for
	several full-time Python specialists in Berlin
Message-ID: <loom.20150123T025142-89@post.gmane.org>

Hi *, 

Please accept my apologies in advance for being off-topic. 
We are currently searching (high and low) for passionate Python programmers 
for Berlin for a leading multinational provider of real-time ad trading 
platforms. 

The positions are all _new_ as we want to drive the expansion across 
Europe. We decided that Berlin was a great choice given the fantastic local 
tech-scene. 
Altogether we're looking for around 10-12 engineers to join us over the 
coming months. 

Company overview is in a few sentences: 
- privately owned and very tech-driven (CEO is not some sales or financial 
guy but well known within the on Computational Theory research community). 
- develops media trading systems which are used by major companies like 
Google, Yahoo, Yandex, Facebook & Bing. 
- system is used to answer complex computational questions around 
probability, data processing and predict potential user behavior, user-
interest and response over which advertisements to deliver. 

From an engineering perspective this is highly challenging as it operates 
in a High-Availability/High-Traffic environment and requires Real-Time 
processing to decide what ads get displayed. A lot of parameters are being 
taken into consideration to decide what content gets delivered (a problem 
which is essentially NP-hard). The solution is cloud based (SaaS) and work 
is structured within agile teams with fast deployment cycles. On the market 
since many years and headquartered in the UK but with offices all around 
the world. (multicultural, multinational) 

Open to accept applications from candidates based outside Germany because 
we want to attract the strongest candidates and therefore place no limits 
on geography in the search. Talk is cheap, show me the code (as Linus 
Torvalds once said), therefore visa sponsorship will be provided for the 
right candidate. 

The job: 
? Proven track record of previous projects and strong passion for Open 
Source Technologies and High-Traffic, High-Availability Software platforms. 
? Working on complex high load projects deployed across the world; 
? Development of business logic in form of Python and Lua programs for in-
house Internet advertisement platform; 
? Functional testing of implemented business logic using Perl or/and Python 
test frameworks; 
? Support of offline backend data processing programs in Perl and/or 
Python; 
? Coordination with other teams on integration issues; 
? Direct discussions on implementation details with company clients; 
? Analysis of system behavior in production. 

Requirements: 
? Experience in Lua from 2 years to x years (any seniority, ... if you just 
graduated that's fine if you can show some projects you maybe did on the 
side) ; 
? Strong focus on algorithm and system performance & experience; 
? Ability to work with complicates business logic; 
? Passion for Open Source and able to share your know-how across the 
organization; 
? Readiness to study; 
? Good knowledge of English 

Conditions: 
? Smart people strive to surround themselves with people smarter than 
themselves: In this environment you will be working within a leading team 
of global subject matter experts; 
? Professional growth, dealing with the latest technologies; 
? Flexible working hours; 
? Salary review 1-2 times per year; 
? Payable overtime work; 

For more info please feel free to call me +33 (0) 6 98.97.36.17 
or skype (id: valbonneconsulting) 
or send me your CV to: joachim.bauernberger at valbonne-consulting.com 

kind regards, 
Joachim 
-- 
https://thequickword.wordpress.com/2014/02/16/james-irys-history-of-
programming-languages-illustrated-with-pictures-and-large-fonts/

From daniel.kraft at d9t.de  Fri Jan 23 09:00:29 2015
From: daniel.kraft at d9t.de (Daniel Kraft)
Date: Fri, 23 Jan 2015 09:00:29 +0100 (CET)
Subject: [EuroPython] [Off-Topic][Python job opportunity] looking
	for	several full-time Python specialists in Berlin
In-Reply-To: <loom.20150123T025142-89@post.gmane.org>
References: <loom.20150123T025142-89@post.gmane.org>
Message-ID: <41740803.4368957.1422000029445.JavaMail.zimbra@d9t.de>

I'd not call it off-topic, I'd call it spam.

----- Am 23. Jan 2015 um 2:52 schrieb Joachim joachim at valbonne-consulting.com:

> Hi *,
> 
> Please accept my apologies in advance for being off-topic.
> We are currently searching (high and low) for passionate Python programmers
> for Berlin for a leading multinational provider of real-time ad trading
> platforms.
> 
> The positions are all _new_ as we want to drive the expansion across
> Europe. We decided that Berlin was a great choice given the fantastic local
> tech-scene.
> Altogether we're looking for around 10-12 engineers to join us over the
> coming months.
> 
> Company overview is in a few sentences:
> - privately owned and very tech-driven (CEO is not some sales or financial
> guy but well known within the on Computational Theory research community).
> - develops media trading systems which are used by major companies like
> Google, Yahoo, Yandex, Facebook & Bing.
> - system is used to answer complex computational questions around
> probability, data processing and predict potential user behavior, user-
> interest and response over which advertisements to deliver.
> 
> From an engineering perspective this is highly challenging as it operates
> in a High-Availability/High-Traffic environment and requires Real-Time
> processing to decide what ads get displayed. A lot of parameters are being
> taken into consideration to decide what content gets delivered (a problem
> which is essentially NP-hard). The solution is cloud based (SaaS) and work
> is structured within agile teams with fast deployment cycles. On the market
> since many years and headquartered in the UK but with offices all around
> the world. (multicultural, multinational)
> 
> Open to accept applications from candidates based outside Germany because
> we want to attract the strongest candidates and therefore place no limits
> on geography in the search. Talk is cheap, show me the code (as Linus
> Torvalds once said), therefore visa sponsorship will be provided for the
> right candidate.
> 
> The job:
> ? Proven track record of previous projects and strong passion for Open
> Source Technologies and High-Traffic, High-Availability Software platforms.
> ? Working on complex high load projects deployed across the world;
> ? Development of business logic in form of Python and Lua programs for in-
> house Internet advertisement platform;
> ? Functional testing of implemented business logic using Perl or/and Python
> test frameworks;
> ? Support of offline backend data processing programs in Perl and/or
> Python;
> ? Coordination with other teams on integration issues;
> ? Direct discussions on implementation details with company clients;
> ? Analysis of system behavior in production.
> 
> Requirements:
> ? Experience in Lua from 2 years to x years (any seniority, ... if you just
> graduated that's fine if you can show some projects you maybe did on the
> side) ;
> ? Strong focus on algorithm and system performance & experience;
> ? Ability to work with complicates business logic;
> ? Passion for Open Source and able to share your know-how across the
> organization;
> ? Readiness to study;
> ? Good knowledge of English
> 
> Conditions:
> ? Smart people strive to surround themselves with people smarter than
> themselves: In this environment you will be working within a leading team
> of global subject matter experts;
> ? Professional growth, dealing with the latest technologies;
> ? Flexible working hours;
> ? Salary review 1-2 times per year;
> ? Payable overtime work;
> 
> For more info please feel free to call me +33 (0) 6 98.97.36.17
> or skype (id: valbonneconsulting)
> or send me your CV to: joachim.bauernberger at valbonne-consulting.com
> 
> kind regards,
> Joachim
> --
> https://thequickword.wordpress.com/2014/02/16/james-irys-history-of-
> programming-languages-illustrated-with-pictures-and-large-fonts/
> _______________________________________________
> EuroPython mailing list
> EuroPython at python.org
> https://mail.python.org/mailman/listinfo/europython

-- 
*Daniel Kraft*
Gesch?ftsf?hrer

D9T GmbH - Magirusstr. 39/1 - D-89077 Ulm
Tel: +49 731 1411 696-0 - Fax: +49 731 3799-220

Gesch?ftsf?hrer: Daniel Kraft
Sitz und Register: Ulm, HRB 722416
Ust.IdNr: DE 260484638

http://d9t.de - Systemhaus f?r Internetl?sungen
info at d9t.de

From gherman at darwin.in-berlin.de  Fri Jan 23 09:24:01 2015
From: gherman at darwin.in-berlin.de (Dinu Gherman)
Date: Fri, 23 Jan 2015 09:24:01 +0100
Subject: [EuroPython] [Off-Topic][Python job opportunity] looking for
	several full-time Python specialists in Berlin
In-Reply-To: <loom.20150123T025142-89@post.gmane.org>
References: <loom.20150123T025142-89@post.gmane.org>
Message-ID: <AF248AC2-F540-4711-8E5D-0562C3741200@darwin.in-berlin.de>

Joachim,

"Thank you" for spamming this list (and other ones) and welcome on people's blacklists for unprofessional recruiters!

May you get the people that you deserve!

Dinu

--
Sent on the move.
Von unterwegs gesendet.

> Am 23.01.2015 um 02:52 schrieb Joachim <joachim at valbonne-consulting.com>:
> 
> Please accept my apologies in advance for being off-topic. 
> We are currently searching (high and low) for passionate Python programmers 
> for Berlin for a leading multinational provider of real-time ad trading 
> platforms.

From mal at europython.eu  Fri Jan 23 09:50:42 2015
From: mal at europython.eu (M.-A. Lemburg)
Date: Fri, 23 Jan 2015 09:50:42 +0100
Subject: [EuroPython] [Off-Topic][Python job opportunity] looking for
 several full-time Python specialists in Berlin
In-Reply-To: <loom.20150123T025142-89@post.gmane.org>
References: <loom.20150123T025142-89@post.gmane.org>
Message-ID: <54C20B62.4010506@europython.eu>

Hi Joachim,

if you're recruiting, you will likely get better results by
sponsoring EuroPython and using th recruiting features of the
sponsor packages than posting on this list:

    http://ep2015.europython.eu/

or contact us directly:

    sponsoring at europython.eu

Thanks,
-- 
Marc-Andre Lemburg
Director
EuroPython Society
http://www.europython-society.org/

From funthyme at gmail.com  Fri Jan 23 17:01:53 2015
From: funthyme at gmail.com (John Pinner)
Date: Fri, 23 Jan 2015 16:01:53 +0000
Subject: [EuroPython] [Off-Topic][Python job opportunity] looking for
 several full-time Python specialists in Berlin
In-Reply-To: <54C20B62.4010506@europython.eu>
References: <loom.20150123T025142-89@post.gmane.org>
 <54C20B62.4010506@europython.eu>
Message-ID: <CAB-vKORXi-ST604AJsQCqS5DiPUJ_Ku734x3pGWzPxEuWy+2ZQ@mail.gmail.com>

On 23 January 2015 at 08:50, M.-A. Lemburg <mal at europython.eu> wrote:
> Hi Joachim,
>
> if you're recruiting, you will likely get better results by
> sponsoring EuroPython and using th recruiting features of the
> sponsor packages than posting on this list:
>
>     http://ep2015.europython.eu/
>
> or contact us directly:
>
>     sponsoring at europython.eu

+1

(and please don't spam the UK lists.)

John
--

From mal at europython.eu  Fri Jan 30 12:00:43 2015
From: mal at europython.eu (M.-A. Lemburg)
Date: Fri, 30 Jan 2015 12:00:43 +0100
Subject: [EuroPython] EuroPython 2015: New Code of Conduct
Message-ID: <54CB645B.90707@europython.eu>

For EuroPython 2015 we have chosen to use a new code of conduct (CoC)
that is based on the PyCon UK Code of Conduct [1].

We think that it reads much nicer than the one we had before, while
serving the same purpose. In summary:


Be nice to each other
---------------------

We trust that attendees will treat each other in a way that reflects
the widely held view that diversity and friendliness are strengths of
our community to be celebrated and fostered.

Furthermore, we believe attendees have a right to:

 * be treated with courtesy, dignity and respect;

 * be free from any form of discrimination, victimization, harassment
   or bullying;

 * enjoy an environment free from unwelcome behavior, inappropriate
   language and unsuitable imagery.


Here?s the permanent link to the CoC for 2015:

    EuroPython 2015 - Code of Conduct
    http://ep2015.europython.eu/coc/

We?d like to thank the PyCon UK organizers for their work on the CoC
and for putting it under a CC license.

[1] http://pyconuk.net/CodeOfConduct

Thanks,
-?
EuroPython Society (EPS)
http://www.europython-society.org/

From ntoll at ntoll.org  Fri Jan 30 13:41:41 2015
From: ntoll at ntoll.org (Nicholas H.Tollervey)
Date: Fri, 30 Jan 2015 12:41:41 +0000
Subject: [EuroPython] EuroPython 2015: New Code of Conduct
In-Reply-To: <54CB645B.90707@europython.eu>
References: <54CB645B.90707@europython.eu>
Message-ID: <54CB7C05.2010303@ntoll.org>

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Yay! :-)

N.

On 30/01/15 11:00, M.-A. Lemburg wrote:
> For EuroPython 2015 we have chosen to use a new code of conduct
> (CoC) that is based on the PyCon UK Code of Conduct [1].
> 
> We think that it reads much nicer than the one we had before,
> while serving the same purpose. In summary:
> 
> 
> Be nice to each other ---------------------
> 
> We trust that attendees will treat each other in a way that
> reflects the widely held view that diversity and friendliness are
> strengths of our community to be celebrated and fostered.
> 
> Furthermore, we believe attendees have a right to:
> 
> * be treated with courtesy, dignity and respect;
> 
> * be free from any form of discrimination, victimization,
> harassment or bullying;
> 
> * enjoy an environment free from unwelcome behavior, inappropriate 
> language and unsuitable imagery.
> 
> 
> Here?s the permanent link to the CoC for 2015:
> 
> EuroPython 2015 - Code of Conduct http://ep2015.europython.eu/coc/
> 
> We?d like to thank the PyCon UK organizers for their work on the
> CoC and for putting it under a CC license.
> 
> [1] http://pyconuk.net/CodeOfConduct
> 
> Thanks, -? EuroPython Society (EPS) 
> http://www.europython-society.org/ 
> _______________________________________________ EuroPython mailing
> list EuroPython at python.org 
> https://mail.python.org/mailman/listinfo/europython
> 

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From fklebczyk at gmail.com  Fri Jan 30 17:00:32 2015
From: fklebczyk at gmail.com (=?UTF-8?B?RmlsaXAgS8WCxJliY3p5aw==?=)
Date: Fri, 30 Jan 2015 17:00:32 +0100
Subject: [EuroPython] EuroPython 2015: New Code of Conduct
In-Reply-To: <54CB645B.90707@europython.eu>
References: <54CB645B.90707@europython.eu>
Message-ID: <54CBAAA0.5020809@gmail.com>

W dniu 30.01.2015 o 12:00, M.-A. Lemburg pisze:
> Be nice to each other
> ---------------------
>
> We trust that attendees will treat each other in a way that reflects
> the widely held view that diversity and friendliness are strengths of
> our community to be celebrated and fostered.
>
> Furthermore, we believe attendees have a right to:
>
>   * be treated with courtesy, dignity and respect;
>
>   * be free from any form of discrimination, victimization, harassment
>     or bullying;
>
>   * enjoy an environment free from unwelcome behavior, inappropriate
>     language and unsuitable imagery.
>
>
> Here?s the permanent link to the CoC for 2015:
>
>      EuroPython 2015 - Code of Conduct
>      http://ep2015.europython.eu/coc/

Very good Code of Conduct - short, but thanks to it being a general one 
it covers everything important without going much into details. Very 
long Code of Conducts are less likely to be read and for example 
mentioning different kind of discrimination doesn't make so much sense 
as discrimination for _any_ reason is not ok and should not be tolerated 
in any situation. Besides, in the end what really matters is how well 
the CoC is executed when issues arise during the conference - for 
example how victims and offenders are approached by the organizers. I 
really would be open to hear how such situations are handled (of course 
without names) and what are the best practices in such cases.

So big respect from my side for PyCon UK people that prepared this CoC. 
I think it is very probable that PyCon PL will also adopt this version.

Regards,
Filip