[IPython-dev] executing notebooks locally
Toby Burnett
tburnett at myuw.net
Wed Jan 29 12:42:20 EST 2014
I'm using IPython notebooks to document code, in which cell output reflects the machine it was run on. I want to export the notebooks to a different machine, and rerun them to reflect that machine's environment. That is, the equivalent of starting a server, loading each notebook in a browser, then clicking Cell |Run All. Obviously it would be more convenient to just run a local script to do this.
There seems to be no such option in the ipython notebook command. But I found this on stackoverflow:
http://stackoverflow.com/questions/19640280/execute-another-ipython-notebook-in-a-separate-namespace
My attempt to do this is:
from IPython.nbformat import current
ip = get_ipython()
with open('Untitled1.ipynb') as f:
nb = current.read(f, 'json')
code_cells = filter( lambda x: x.cell_type=='code', nb.worksheets[0].cells)
map(ip.run_cell, code_cells)
But with a result
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
<ipython-input-16-530ade14060f> in <module>()
4 nb = current.read(f, 'json')
5 code_cells = filter( lambda x: x.cell_type=='code', nb.worksheets[0].cells)
----> 6 map(ip.run_cell, code_cells)
/phys/users/tburnett/anaconda/lib/python2.7/site-packages/IPython/core/interactiveshell.pyc in run_cell(self, raw_cell, store_history, silent, shell_futures)
2642 __future__ imports are not shared in either direction.
2643 """
-> 2644 if (not raw_cell) or raw_cell.isspace():
2645 return
2646
/phys/users/tburnett/anaconda/lib/python2.7/site-packages/IPython/utils/ipstruct.pyc in __getattr__(self, key)
147 result = self[key]
148 except KeyError:
--> 149 raise AttributeError(key)
150 else:
151 return result
AttributeError: isspace
Indeed the NotebookNode object does not have an isspace function. (This is 2.0-dev.)
Any thoughts?
--Toby
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