[Matplotlib-devel] build fails on MacOsX 10.15.3
Thomas Caswell
tcaswell at gmail.com
Mon Apr 6 18:00:57 EDT 2020
Lars,
It looks like you are missing some of the standard c++ headers. How did
you install your compiler?
Tom
On Sun, Apr 5, 2020 at 2:33 PM Lars Prehn <lprehn at mpi-inf.mpg.de> wrote:
> Hi everyone,
>
> I'd like to build matplotlib from the gitlab source. I'm stuck at the
> point where I need to run:
>
> python -mpip install .
>
> the output looks as follows (shortened a bit):
>
>
> (matplotlib_dev) Tests-MacBook-Pro-2:matplotlib tadmin$ python -mpip
> install .
> Processing /Users/tadmin/projects_2020/matplotlib
> Requirement already satisfied: cycler>=0.10 in
> /Users/tadmin/matplotlib_dev/lib/python3.7/site-packages (from
> matplotlib==3.2.1+1866.gd1f07d344.dirty) (0.10.0)
> Requirement already satisfied: kiwisolver>=1.0.1 in
> /Users/tadmin/matplotlib_dev/lib/python3.7/site-packages (from
> matplotlib==3.2.1+1866.gd1f07d344.dirty) (1.2.0)
> Requirement already satisfied: numpy>=1.15 in
> /Users/tadmin/matplotlib_dev/lib/python3.7/site-packages (from
> matplotlib==3.2.1+1866.gd1f07d344.dirty) (1.18.2)
> Requirement already satisfied: pillow>=6.2.0 in
> /Users/tadmin/matplotlib_dev/lib/python3.7/site-packages (from
> matplotlib==3.2.1+1866.gd1f07d344.dirty) (7.1.1)
> Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.3
> in /Users/tadmin/matplotlib_dev/lib/python3.7/site-packages (from
> matplotlib==3.2.1+1866.gd1f07d344.dirty) (2.4.6)
> Requirement already satisfied: python-dateutil>=2.1 in
> /Users/tadmin/matplotlib_dev/lib/python3.7/site-packages (from
> matplotlib==3.2.1+1866.gd1f07d344.dirty) (2.8.1)
> Requirement already satisfied: six in
> /Users/tadmin/matplotlib_dev/lib/python3.7/site-packages (from
> cycler>=0.10->matplotlib==3.2.1+1866.gd1f07d344.dirty) (1.14.0)
> Installing collected packages: matplotlib
> Running setup.py install for matplotlib ... error
> ERROR: Command errored out with exit status 1:
> command: /Users/tadmin/matplotlib_dev/bin/python -u -c 'import
> sys, setuptools, tokenize; sys.argv[0] =
> '"'"'/private/var/folders/km/pk_8hct1101_18g4znr_wdm00000gq/T/pip-req-build-x2e7fmv6/setup.py'"'"';
>
> __file__='"'"'/private/var/folders/km/pk_8hct1101_18g4znr_wdm00000gq/T/pip-req-build-x2e7fmv6/setup.py'"'"';f=getattr(tokenize,
>
> '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"',
> '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))'
> install --record
> /private/var/folders/km/pk_8hct1101_18g4znr_wdm00000gq/T/pip-record-qxw7pttp/install-record.txt
>
> --single-version-externally-managed --compile --install-headers
> /Users/tadmin/matplotlib_dev/include/site/python3.7/matplotlib
> cwd:
>
> /private/var/folders/km/pk_8hct1101_18g4znr_wdm00000gq/T/pip-req-build-x2e7fmv6/
> Complete output (569 lines):
>
> Edit setup.cfg to change the build options; suppress output with
> --quiet.
>
> BUILDING MATPLOTLIB
> matplotlib: yes [3.2.1+1866.gd1f07d344.dirty]
> python: yes [3.7.1 (default, Dec 14 2018, 13:28:58) [Clang 4.0.1
> (tags/RELEASE_401/final)]]
> platform: yes [darwin]
> sample_data: yes [installing]
> tests: no [skipping due to configuration]
> macosx: yes [installing]
>
> /Users/tadmin/anaconda3/lib/python3.7/distutils/dist.py:274:
> UserWarning: Unknown distribution option: 'long_description_content_type'
> warnings.warn(msg)
> running install
> running build
> running build_py
> creating build/lib.macosx-10.7-x86_64-3.7
> copying lib/pylab.py -> build/lib.macosx-10.7-x86_64-3.7
> creating build/lib.macosx-10.7-x86_64-3.7/mpl_toolkits
> copying lib/mpl_toolkits/__init__.py ->
> build/lib.macosx-10.7-x86_64-3.7/mpl_toolkits
> creating build/lib.macosx-10.7-x86_64-3.7/matplotlib
> copying lib/matplotlib/hatch.py ->
> build/lib.macosx-10.7-x86_64-3.7/matplotlib
>
> .....
>
> copying lib/matplotlib/mpl-data/stylelib/seaborn-deep.mplstyle ->
> build/lib.macosx-10.7-x86_64-3.7/matplotlib/mpl-data/stylelib
> copying lib/matplotlib/mpl-data/images/back.pdf ->
> build/lib.macosx-10.7-x86_64-3.7/matplotlib/mpl-data/images
> UPDATING build/lib.macosx-10.7-x86_64-3.7/matplotlib/_version.py
> set build/lib.macosx-10.7-x86_64-3.7/matplotlib/_version.py to
> '3.2.1+1866.gd1f07d344.dirty'
> running build_ext
> building 'matplotlib.backends._backend_agg' extension
> /usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code
> -DNDEBUG -g -fwrapv -O3 -Wall -I/Users/tadmin/anaconda3/include -arch
> x86_64 -I/Users/tadmin/anaconda3/include -arch x86_64
> -DPY_ARRAY_UNIQUE_SYMBOL=MPL_matplotlib_backends__backend_agg_ARRAY_API
> -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -D__STDC_FORMAT_MACROS=1
> -DFREETYPE_BUILD_TYPE=local -Ibuild/freetype-2.6.1/include
> -Iextern/agg24-svn/include
> -I/Users/tadmin/matplotlib_dev/lib/python3.7/site-packages/numpy/core/include
>
> -I/Users/tadmin/matplotlib_dev/include
> -I/Users/tadmin/anaconda3/include/python3.7m -c src/checkdep_freetype2.c
> -o build/temp.macosx-10.7-x86_64-3.7/src/checkdep_freetype2.o
> src/checkdep_freetype2.c:14:9: warning: Compiling with FreeType
> version 2.6.1. [-W#pragma-messages]
> #pragma message("Compiling with FreeType version " \
> ^
> 1 warning generated.
> /usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code
> -DNDEBUG -g -fwrapv -O3 -Wall -I/Users/tadmin/anaconda3/include -arch
> x86_64 -I/Users/tadmin/anaconda3/include -arch x86_64
> -DPY_ARRAY_UNIQUE_SYMBOL=MPL_matplotlib_backends__backend_agg_ARRAY_API
> -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -D__STDC_FORMAT_MACROS=1
> -DFREETYPE_BUILD_TYPE=local -Ibuild/freetype-2.6.1/include
> -Iextern/agg24-svn/include
> -I/Users/tadmin/matplotlib_dev/lib/python3.7/site-packages/numpy/core/include
>
> -I/Users/tadmin/matplotlib_dev/include
> -I/Users/tadmin/anaconda3/include/python3.7m -c src/mplutils.cpp -o
> build/temp.macosx-10.7-x86_64-3.7/src/mplutils.o
> warning: include path for stdlibc++ headers not found; pass
> '-std=libc++' on the command line to use the libc++ standard library
> instead [-Wstdlibcxx-not-found]
> 1 warning generated.
> /usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code
> -DNDEBUG -g -fwrapv -O3 -Wall -I/Users/tadmin/anaconda3/include -arch
> x86_64 -I/Users/tadmin/anaconda3/include -arch x86_64
> -DPY_ARRAY_UNIQUE_SYMBOL=MPL_matplotlib_backends__backend_agg_ARRAY_API
> -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -D__STDC_FORMAT_MACROS=1
> -DFREETYPE_BUILD_TYPE=local -Ibuild/freetype-2.6.1/include
> -Iextern/agg24-svn/include
> -I/Users/tadmin/matplotlib_dev/lib/python3.7/site-packages/numpy/core/include
>
> -I/Users/tadmin/matplotlib_dev/include
> -I/Users/tadmin/anaconda3/include/python3.7m -c src/py_converters.cpp -o
> build/temp.macosx-10.7-x86_64-3.7/src/py_converters.o
> warning: include path for stdlibc++ headers not found; pass
> '-std=libc++' on the command line to use the libc++ standard library
> instead [-Wstdlibcxx-not-found]
> In file included from src/py_converters.cpp:3:
> In file included from src/py_converters.h:17:
> src/_backend_agg_basic_types.h:7:10: fatal error: 'vector' file not
> found
> #include <vector>
> ^~~~~~~~
> 1 warning and 1 error generated.
> error: command '/usr/bin/gcc' failed with exit status 1
> ----------------------------------------
> ERROR: Command errored out with exit status 1:
> /Users/tadmin/matplotlib_dev/bin/python -u -c 'import sys, setuptools,
> tokenize; sys.argv[0] =
> '"'"'/private/var/folders/km/pk_8hct1101_18g4znr_wdm00000gq/T/pip-req-build-x2e7fmv6/setup.py'"'"';
>
> __file__='"'"'/private/var/folders/km/pk_8hct1101_18g4znr_wdm00000gq/T/pip-req-build-x2e7fmv6/setup.py'"'"';f=getattr(tokenize,
>
> '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"',
> '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))'
> install --record
> /private/var/folders/km/pk_8hct1101_18g4znr_wdm00000gq/T/pip-record-qxw7pttp/install-record.txt
>
> --single-version-externally-managed --compile --install-headers
> /Users/tadmin/matplotlib_dev/include/site/python3.7/matplotlib Check the
> logs for full command output.
>
>
>
> How can I approach to solve this?
>
> Best regards,
>
> Lars
>
> _______________________________________________
> Matplotlib-devel mailing list
> Matplotlib-devel at python.org
> https://mail.python.org/mailman/listinfo/matplotlib-devel
>
--
Thomas Caswell
tcaswell at gmail.com
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