[Neuroimaging] Dipy installation problem
林義宏
b02207006 at ntu.edu.tw
Wed Dec 9 11:33:47 EST 2015
Hi, I got a problem while installing Dipy package on my Windows x64 system.
I've solved the problem like "unable to find vcvarsall.bat" by solutions online.
That is, the distutils.cfg has been made.
But now new problem pops up...
Error information like："TypeError: unoderable types...." and "failed building wheel for dipy."shows
and I can not find usable solution online.
The followings are the full error information. (but some of this limited by the capacity of CMD I think)
ts
copying dipy\viz\tests\test_fvtk_utils.py -> build\lib.win32-3.5\dipy\viz\test
s
copying dipy\viz\tests\test_fvtk_widgets.py -> build\lib.win32-3.5\dipy\viz\te
sts
copying dipy\viz\tests\test_fvtk_window.py -> build\lib.win32-3.5\dipy\viz\tes
ts
copying dipy\viz\tests\test_regtools.py -> build\lib.win32-3.5\dipy\viz\tests
copying dipy\viz\tests\__init__.py -> build\lib.win32-3.5\dipy\viz\tests
creating build\lib.win32-3.5\dipy\testing
copying dipy\testing\decorators.py -> build\lib.win32-3.5\dipy\testing
copying dipy\testing\memory.py -> build\lib.win32-3.5\dipy\testing
copying dipy\testing\spherepoints.py -> build\lib.win32-3.5\dipy\testing
copying dipy\testing\__init__.py -> build\lib.win32-3.5\dipy\testing
creating build\lib.win32-3.5\dipy\testing\tests
copying dipy\testing\tests\test_decorators.py -> build\lib.win32-3.5\dipy\test
ing\tests
copying dipy\testing\tests\test_memory.py -> build\lib.win32-3.5\dipy\testing\
tests
copying dipy\testing\tests\__init__.py -> build\lib.win32-3.5\dipy\testing\tes
ts
creating build\lib.win32-3.5\dipy\boots
copying dipy\boots\resampling.py -> build\lib.win32-3.5\dipy\boots
copying dipy\boots\__init__.py -> build\lib.win32-3.5\dipy\boots
creating build\lib.win32-3.5\dipy\data
copying dipy\data\fetcher.py -> build\lib.win32-3.5\dipy\data
copying dipy\data\__init__.py -> build\lib.win32-3.5\dipy\data
creating build\lib.win32-3.5\dipy\utils
copying dipy\utils\arrfuncs.py -> build\lib.win32-3.5\dipy\utils
copying dipy\utils\optpkg.py -> build\lib.win32-3.5\dipy\utils
copying dipy\utils\six.py -> build\lib.win32-3.5\dipy\utils
copying dipy\utils\tripwire.py -> build\lib.win32-3.5\dipy\utils
copying dipy\utils\_importlib.py -> build\lib.win32-3.5\dipy\utils
copying dipy\utils\__init__.py -> build\lib.win32-3.5\dipy\utils
creating build\lib.win32-3.5\dipy\utils\tests
copying dipy\utils\tests\test_arrfuncs.py -> build\lib.win32-3.5\dipy\utils\te
sts
copying dipy\utils\tests\test_tripwire.py -> build\lib.win32-3.5\dipy\utils\te
sts
copying dipy\utils\tests\__init__.py -> build\lib.win32-3.5\dipy\utils\tests
creating build\lib.win32-3.5\dipy\fixes
copying dipy\fixes\argparse.py -> build\lib.win32-3.5\dipy\fixes
copying dipy\fixes\__init__.py -> build\lib.win32-3.5\dipy\fixes
creating build\lib.win32-3.5\dipy\external
copying dipy\external\fsl.py -> build\lib.win32-3.5\dipy\external
copying dipy\external\__init__.py -> build\lib.win32-3.5\dipy\external
creating build\lib.win32-3.5\dipy\external\tests
copying dipy\external\tests\__init__.py -> build\lib.win32-3.5\dipy\external\t
ests
creating build\lib.win32-3.5\dipy\segment
copying dipy\segment\clustering.py -> build\lib.win32-3.5\dipy\segment
copying dipy\segment\mask.py -> build\lib.win32-3.5\dipy\segment
copying dipy\segment\metric.py -> build\lib.win32-3.5\dipy\segment
copying dipy\segment\quickbundles.py -> build\lib.win32-3.5\dipy\segment
copying dipy\segment\threshold.py -> build\lib.win32-3.5\dipy\segment
copying dipy\segment\__init__.py -> build\lib.win32-3.5\dipy\segment
creating build\lib.win32-3.5\dipy\segment\benchmarks
copying dipy\segment\benchmarks\bench_quickbundles.py -> build\lib.win32-3.5\d
ipy\segment\benchmarks
copying dipy\segment\benchmarks\__init__.py -> build\lib.win32-3.5\dipy\segmen
t\benchmarks
creating build\lib.win32-3.5\dipy\segment\tests
copying dipy\segment\tests\test_clustering.py -> build\lib.win32-3.5\dipy\segm
ent\tests
copying dipy\segment\tests\test_feature.py -> build\lib.win32-3.5\dipy\segment
\tests
copying dipy\segment\tests\test_mask.py -> build\lib.win32-3.5\dipy\segment\te
sts
copying dipy\segment\tests\test_metric.py -> build\lib.win32-3.5\dipy\segment\
tests
copying dipy\segment\tests\test_qb.py -> build\lib.win32-3.5\dipy\segment\test
s
copying dipy\segment\tests\test_quickbundles.py -> build\lib.win32-3.5\dipy\se
gment\tests
copying dipy\segment\tests\__init__.py -> build\lib.win32-3.5\dipy\segment\tes
ts
creating build\lib.win32-3.5\dipy\sims
copying dipy\sims\phantom.py -> build\lib.win32-3.5\dipy\sims
copying dipy\sims\voxel.py -> build\lib.win32-3.5\dipy\sims
copying dipy\sims\__init__.py -> build\lib.win32-3.5\dipy\sims
creating build\lib.win32-3.5\dipy\sims\tests
copying dipy\sims\tests\test_phantom.py -> build\lib.win32-3.5\dipy\sims\tests
copying dipy\sims\tests\test_voxel.py -> build\lib.win32-3.5\dipy\sims\tests
copying dipy\sims\tests\__init__.py -> build\lib.win32-3.5\dipy\sims\tests
creating build\lib.win32-3.5\dipy\denoise
copying dipy\denoise\nlmeans.py -> build\lib.win32-3.5\dipy\denoise
copying dipy\denoise\noise_estimate.py -> build\lib.win32-3.5\dipy\denoise
copying dipy\denoise\__init__.py -> build\lib.win32-3.5\dipy\denoise
creating build\lib.win32-3.5\dipy\denoise\tests
copying dipy\denoise\tests\test_denoise.py -> build\lib.win32-3.5\dipy\denoise
\tests
copying dipy\denoise\tests\test_nlmeans.py -> build\lib.win32-3.5\dipy\denoise
\tests
copying dipy\denoise\tests\test_noise_estimate.py -> build\lib.win32-3.5\dipy\
denoise\tests
copying dipy\denoise\tests\__init__.py -> build\lib.win32-3.5\dipy\denoise\tes
ts
creating build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\55dir_grad.bval -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\55dir_grad.bvec -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\aniso_vox.nii.gz -> build\lib.win32-3.5\dipy\data\file
s
copying dipy\data\files\C.npy -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\C1.pkl.gz -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\C3.pkl.gz -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\cb_2.npz -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\circle.npy -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\dipy_colormaps.json -> build\lib.win32-3.5\dipy\data\f
iles
copying dipy\data\files\dsi4169_b_table.txt -> build\lib.win32-3.5\dipy\data\f
iles
copying dipy\data\files\dsi515_b_table.txt -> build\lib.win32-3.5\dipy\data\fi
les
copying dipy\data\files\eg_3voxels.pkl -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\evenly_distributed_sphere_362.npz -> build\lib.win32-3
.5\dipy\data\files
copying dipy\data\files\evenly_distributed_sphere_642.npz -> build\lib.win32-3
.5\dipy\data\files
copying dipy\data\files\evenly_distributed_sphere_724.npz -> build\lib.win32-3
.5\dipy\data\files
copying dipy\data\files\fib0.pkl.gz -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\fib1.pkl.gz -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\fib2.pkl.gz -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\func_coef.nii.gz -> build\lib.win32-3.5\dipy\data\file
s
copying dipy\data\files\func_discrete.nii.gz -> build\lib.win32-3.5\dipy\data\
files
copying dipy\data\files\grad_514.txt -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\gtab_3shell.txt -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\gtab_isbi2013_2shell.txt -> build\lib.win32-3.5\dipy\d
ata\files
copying dipy\data\files\gtab_taiwan_dsi.txt -> build\lib.win32-3.5\dipy\data\f
iles
copying dipy\data\files\life_matlab_rmse.npy -> build\lib.win32-3.5\dipy\data\
files
copying dipy\data\files\life_matlab_weights.npy -> build\lib.win32-3.5\dipy\da
ta\files
copying dipy\data\files\repulsion100.npz -> build\lib.win32-3.5\dipy\data\file
s
copying dipy\data\files\repulsion724.npz -> build\lib.win32-3.5\dipy\data\file
s
copying dipy\data\files\S0_10slices.nii.gz -> build\lib.win32-3.5\dipy\data\fi
les
copying dipy\data\files\ScannerVectors_GQI101.txt -> build\lib.win32-3.5\dipy\
data\files
copying dipy\data\files\small_101D.bval -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\small_101D.bvec -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\small_101D.nii.gz -> build\lib.win32-3.5\dipy\data\fil
es
copying dipy\data\files\small_25.bval -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\small_25.bvec -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\small_25.nii.gz -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\small_64D.bvals.npy -> build\lib.win32-3.5\dipy\data\f
iles
copying dipy\data\files\small_64D.gradients.npy -> build\lib.win32-3.5\dipy\da
ta\files
copying dipy\data\files\small_64D.nii -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\sphere_grad.txt -> build\lib.win32-3.5\dipy\data\files
copying dipy\data\files\t1_coronal_slice.npy -> build\lib.win32-3.5\dipy\data\
files
copying dipy\data\files\test_piesno.nii.gz -> build\lib.win32-3.5\dipy\data\fi
les
copying dipy\data\files\tracks300.trk -> build\lib.win32-3.5\dipy\data\files
running build_ext
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\andylin\AppData\Local\Temp\pip-build-8ygf1kth\dipy\setup.py",
line 241, in <module>
main(**extra_setuptools_args)
File "C:\Users\andylin\AppData\Local\Temp\pip-build-8ygf1kth\dipy\setup.py",
line 234, in main
**extra_args
File "C:\Users\andylin\Anaconda3\lib\distutils\core.py", line 148, in setup
dist.run_commands()
File "C:\Users\andylin\Anaconda3\lib\distutils\dist.py", line 955, in run_co
mmands
self.run_command(cmd)
File "C:\Users\andylin\Anaconda3\lib\distutils\dist.py", line 974, in run_co
mmand
cmd_obj.run()
File "C:\Users\andylin\Anaconda3\lib\site-packages\wheel\bdist_wheel.py", li
ne 176, in run
self.run_command('build')
File "C:\Users\andylin\Anaconda3\lib\distutils\cmd.py", line 313, in run_com
mand
self.distribution.run_command(command)
File "C:\Users\andylin\Anaconda3\lib\distutils\dist.py", line 974, in run_co
mmand
cmd_obj.run()
File "C:\Users\andylin\Anaconda3\lib\distutils\command\build.py", line 135,
in run
self.run_command(cmd_name)
File "C:\Users\andylin\Anaconda3\lib\distutils\cmd.py", line 313, in run_com
mand
self.distribution.run_command(command)
File "C:\Users\andylin\Anaconda3\lib\distutils\dist.py", line 974, in run_co
mmand
cmd_obj.run()
File "C:\Users\andylin\Anaconda3\lib\distutils\command\build_ext.py", line 3
07, in run
force=self.force)
File "C:\Users\andylin\Anaconda3\lib\distutils\ccompiler.py", line 1031, in
new_compiler
return klass(None, dry_run, force)
File "C:\Users\andylin\Anaconda3\lib\distutils\cygwinccompiler.py", line 282
, in __init__
CygwinCCompiler.__init__ (self, verbose, dry_run, force)
File "C:\Users\andylin\Anaconda3\lib\distutils\cygwinccompiler.py", line 126
, in __init__
if self.ld_version >= "2.10.90":
TypeError: unorderable types: NoneType() >= str()
----------------------------------------
Failed building wheel for dipy
Failed to build dipy
Installing collected packages: dipy
Running setup.py install for dipy
Complete output from command C:\Users\andylin\Anaconda3\python.exe -c "impor
t setuptools, tokenize;__file__='C:\\Users\\andylin\\AppData\\Local\\Temp\\pip-b
uild-8ygf1kth\\dipy\\setup.py';exec(compile(getattr(tokenize, 'open', open)(__fi
le__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record C:\User
s\andylin\AppData\Local\Temp\pip-r_4d6qec-record\install-record.txt --single-ver
sion-externally-managed --compile:
running install
running build
running build_py
running build_ext
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\andylin\AppData\Local\Temp\pip-build-8ygf1kth\dipy\setup.py
", line 241, in <module>
main(**extra_setuptools_args)
File "C:\Users\andylin\AppData\Local\Temp\pip-build-8ygf1kth\dipy\setup.py
", line 234, in main
**extra_args
File "C:\Users\andylin\Anaconda3\lib\distutils\core.py", line 148, in setu
p
dist.run_commands()
File "C:\Users\andylin\Anaconda3\lib\distutils\dist.py", line 955, in run_
commands
self.run_command(cmd)
File "C:\Users\andylin\Anaconda3\lib\distutils\dist.py", line 974, in run_
command
cmd_obj.run()
File "C:\Users\andylin\AppData\Local\Temp\pip-build-8ygf1kth\dipy\setup.py
", line 153, in run
install.install.run(self)
File "C:\Users\andylin\Anaconda3\lib\site-packages\setuptools-18.5-py3.5.e
gg\setuptools\command\install.py", line 61, in run
File "C:\Users\andylin\Anaconda3\lib\distutils\command\install.py", line 5
39, in run
self.run_command('build')
File "C:\Users\andylin\Anaconda3\lib\distutils\cmd.py", line 313, in run_c
ommand
self.distribution.run_command(command)
File "C:\Users\andylin\Anaconda3\lib\distutils\dist.py", line 974, in run_
command
cmd_obj.run()
File "C:\Users\andylin\Anaconda3\lib\distutils\command\build.py", line 135
, in run
self.run_command(cmd_name)
File "C:\Users\andylin\Anaconda3\lib\distutils\cmd.py", line 313, in run_c
ommand
self.distribution.run_command(command)
File "C:\Users\andylin\Anaconda3\lib\distutils\dist.py", line 974, in run_
command
cmd_obj.run()
File "C:\Users\andylin\Anaconda3\lib\distutils\command\build_ext.py", line
307, in run
force=self.force)
File "C:\Users\andylin\Anaconda3\lib\distutils\ccompiler.py", line 1031, i
n new_compiler
return klass(None, dry_run, force)
File "C:\Users\andylin\Anaconda3\lib\distutils\cygwinccompiler.py", line 2
82, in __init__
CygwinCCompiler.__init__ (self, verbose, dry_run, force)
File "C:\Users\andylin\Anaconda3\lib\distutils\cygwinccompiler.py", line 1
26, in __init__
if self.ld_version >= "2.10.90":
TypeError: unorderable types: NoneType() >= str()
----------------------------------------
Command "C:\Users\andylin\Anaconda3\python.exe -c "import setuptools, tokenize;_
_file__='C:\\Users\\andylin\\AppData\\Local\\Temp\\pip-build-8ygf1kth\\dipy\\set
up.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r
\n', '\n'), __file__, 'exec'))" install --record C:\Users\andylin\AppData\Local\
Temp\pip-r_4d6qec-record\install-record.txt --single-version-externally-managed
--compile" failed with error code 1 in C:\Users\andylin\AppData\Local\Temp\pip-b
uild-8ygf1kth\dipy
C:\Users\andylin\Anaconda3>
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