[Neuroimaging] [Dipy] Problem with QuickBundle

[Eleftherios Garyfallidis]

Hi Ignacio,

Thank you for your question. We are currently changing the API of
QuickBundles. Most likely you are using the documentation from the
development version but running code from a released version?

Can you try

import dipy
dipy.get_info()

and tell me here what you are getting?

Many thanks,
Eleftherios


On Mon, Jul 13, 2015 at 6:00 PM, Ignacio Javier Osorio Wallace <
iosorio at udec.cl> wrote:

> Hello there, my name is Ignacio Osorio Wallace, I'm an electronic engineer
> student at Concepcion University (Chile). I'm currently working on the
> creating of a software that could use your library to reconstruct and
> segment brain fiber from the NIfTI1Image objects.
>
> I followed your examples to get a hint of how to work with Dipy. And I'm
> having some problems with the QuickBundle. The specific problem is shown
> here:
>
> """
> Traceback (most recent call last):
>   File "/home/cocobio/MEGA/2015/Python/Project/segment_quickbundles.py",
> line 43, in <module>
>     clusters = qb.cluster(streamlines)
>   File
> "/usr/local/lib/python2.7/dist-packages/dipy/segment/clustering.py", line
> 459, in cluster
>     ordering=ordering)
>   File "dipy/segment/clustering_algorithms.pyx", line 111, in
> dipy.segment.clustering_algorithms.quickbundles
> (dipy/segment/clustering_algorithms.c:3179)
>   File "dipy/segment/clusteringspeed.pyx", line 273, in
> dipy.segment.clusteringspeed.QuickBundles.assignment_step
> (dipy/segment/clusteringspeed.c:3840)
> ValueError: Data features' shapes must be compatible according to the
> metric used!
> """
>
> I think I'm not doing anything wrong, since this is the example code
> provided by the Dipy web-page. The reconstruction and tracking using ODF is
> working perfectly.
>
> If you could help in any way, I will greatly appreciate.
>
> Thanks for your time. And I hope my English didn't sound to casual.
>
> Ignacio Osorio Wallace.
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>
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