[Neuroimaging] Nipy 0.4.0, finally
Matthew Brett
matthew.brett at gmail.com
Sun Oct 18 01:20:41 EDT 2015
Hi,
I am pleased and relieved to announce the 0.4.0 release of nipy.
Here's the changelog:
Abbreviated authors are:
* MB - Matthew Brett
* BT - Bertrand Thirion
* AR - Alexis Roche
* YH - Yarik Halchenko
* JBP - Jean-Baptiste Poline
* JT - Jonathan Taylor
* 0.4.0 (Saturday 18 October 2015)
* Bugfix, refactoring and compatibility release;
* Full port to Python 3 using single code-base;
* Various fixes for modern numpy, scipy, sympy, nibabel compatibility;
* Refactor space-time realignment (AR);
* Change in interface for slice-timing options in space-time realign
(AR+MB);
* New ``nipy_4d_realign`` script to run space-time realign (Ariel Rokem);
* Drop requirement for BLAS / LAPACK external library at build-time (AR);
* Move much code out of nipy.labs into main tree (AR, BT);
* Deprecate remaining code in nipy.labs (AR, BT);
* Updates to landmark learning code including API (BT);
* Various fixes to design matrix machinery (BT, Michael Waskom);
* Fix to two-sample permutation test suggested by github user jwirsich (BF);
* Refactoring and fixes to design matrix drift calculations (JBP);
* Extending API of resampling code to allow more ndimage kwargs (JBP);
* Start of new example on OpenFMRI ds105 dataset (JT);
* New ``block_design`` function for designs with specified onsets (JT);
* New ``show_contrast`` function for reviewing contrasts (JT);
* Fix for bug in ``nipy_diagnose`` script / ``screens`` module giving
incorrect PCA output;
* Added SPM HRF to other HRF options;
* Redesign concept of an image "space" with new image space modules,
functions, classes;
* Various fixes for correct installation provided or suggested by YH;
* Some visualization changes by Elvis Dohmatob;
The latest source and wheels should be up on pypi in in :
https://pypi.python.org/pypi/nipy
Thanks to everyone who contributed to this release:
Alexis Roche
Bertrand Thirion
Ariel Rokem
Elvis Dohmatob
Jean-Baptiste Poline
Yaroslav Halchenko
Jonathan Taylor
Ben Cipollini
Gael Varoquaux
Fabian Pedregosa
Endolith
Michael Waskom
And of course - your noble selves for discussion and advice,
Cheers,
Matthew
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