[Neuroimaging] Site Contributions

Tue Oct 27 17:17:13 EDT 2015

will do.
thanks!

On Tue, Oct 27, 2015 at 4:20 PM, Ariel Rokem <arokem at gmail.com> wrote:

> Hey Julien,
>
> On Tue, Oct 27, 2015 at 12:04 PM, Julien Cohen-Adad <jcohen at polymtl.ca>
> wrote:
>
>> Hi everyone,
>>
>> would it be possible to add our neuroimaging project to the nipy website?
>> https://github.com/neuropoly/spinalcordtoolbox
>>
>>
> I am +1 for adding the toolbox to the project directory.
>
> How about putting in a PR on the website Github repo for this?
>
> http://nipy.org/contribute.html#add-a-package
>
>
>
>> it is 100% python and notably uses nibabel and dipy.
>>
>> cheers
>> julien
>>
>>
>> --
>> Julien Cohen-Adad, PhD
>> Assistant Professor, Polytechnique Montreal
>> Associate Director, Functional Neuroimaging Unit, University of Montreal
>> Phone: 514 340 5121 (office: 2264);  Skype: jcohenadad
>> Web: www.neuro.polymtl.ca
>>
>> On Tue, Oct 27, 2015 at 2:44 PM, Eleftherios Garyfallidis <
>> garyfallidis at gmail.com> wrote:
>>
>>> Epic awesomeness! Thank you Vanessa!
>>>
>>> On Tue, Oct 27, 2015 at 2:40 PM, Ariel Rokem <arokem at gmail.com> wrote:
>>>
>>>> Great work! Will resubmit my blog-post PR through the new mechanism.
>>>>
>>>> On Tue, Oct 27, 2015 at 11:38 AM, vanessa sochat <vsochat at stanford.edu>
>>>> wrote:
>>>>
>>>>> Hi everyone,
>>>>>
>>>>> I just added the missing CNAME file, apologies for the oversight, I
>>>>> did not know it was there :) It looks like nipy.org is working as
>>>>> well now too - please let me know if you see any issues.
>>>>>
>>>>> Circle is expected to have some changes in the next week, so I am
>>>>> going to wait for the weekend to debug the building of artifacts. Will let
>>>>> you know when I fix that up!
>>>>>
>>>>> Best,
>>>>>
>>>>> Vanessa
>>>>>
>>>>> On Tue, Oct 27, 2015 at 11:30 AM, vanessa sochat <vsochat at stanford.edu
>>>>> > wrote:
>>>>>
>>>>>> Hi Everyone,
>>>>>>
>>>>>> Site is live!
>>>>>>
>>>>>> https://nipy.github.io/
>>>>>>
>>>>>> Ariel - I'm not sure how to set up the nipy.org. Would you mind
>>>>>> taking a look and fixing that up?
>>>>>>
>>>>>> Circle is having some bugs with the artifact generation, I think I
>>>>>> can probably fix it, but not during the work week. Ben - I added your
>>>>>> contribution to the README but didn't get the other comment in time. The
>>>>>> good news is now anyone and everyone can submit changes as PR. I encourage
>>>>>> everyone to familiarize yourself with tumblr, and start contributing
>>>>>> content, PRs to tweak it.
>>>>>>
>>>>>> Best,
>>>>>>
>>>>>> Vanessa
>>>>>>
>>>>>> On Tue, Oct 27, 2015 at 11:10 AM, vanessa sochat <
>>>>>> vsochat at stanford.edu> wrote:
>>>>>>
>>>>>>> Got it! Thanks! :)
>>>>>>>
>>>>>>> On Tue, Oct 27, 2015 at 11:07 AM, Ariel Rokem <arokem at gmail.com>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> Hi,
>>>>>>>> On Tue, Oct 27, 2015 at 10:56 AM, vanessa sochat <
>>>>>>>> vsochat at stanford.edu> wrote:
>>>>>>>>
>>>>>>>>> Hi Ariel,
>>>>>>>>>
>>>>>>>>> Please add me as an admin to nipy.github.io, so I can set up
>>>>>>>>> circle for CI. Thanks!
>>>>>>>>>
>>>>>>>>>
>>>>>>>> I believe I just did that. Let me know how you get on.
>>>>>>>>
>>>>>>>>
>>>>>>>>> Best,
>>>>>>>>>
>>>>>>>>> Vanessa
>>>>>>>>>
>>>>>>>>> On Tue, Oct 27, 2015 at 10:42 AM, vanessa sochat <
>>>>>>>>> vsochat at stanford.edu> wrote:
>>>>>>>>>
>>>>>>>>>> Just as a proof of concept for adding a project - I just added a
>>>>>>>>>> new entry to the data file (copy pasting basically), copied one file, and
>>>>>>>>>> the entire process took me like, 48 seconds :)
>>>>>>>>>>
>>>>>>>>>> On Tue, Oct 27, 2015 at 10:36 AM, Ben Cipollini <
>>>>>>>>>> bcipolli at ucsd.edu> wrote:
>>>>>>>>>>
>>>>>>>>>>> Thanks Vanessa!
>>>>>>>>>>>
>>>>>>>>>>> On Tue, Oct 27, 2015 at 10:35 AM, vanessa sochat <
>>>>>>>>>>> vsochat at stanford.edu> wrote:
>>>>>>>>>>>
>>>>>>>>>>>> I will do some tweaks and get the site working. There will be a
>>>>>>>>>>>> change for the URL so there might be some bugs with my initial release, but
>>>>>>>>>>>> I'll get it fixed asap. Will send an update later.
>>>>>>>>>>>>
>>>>>>>>>>>> On Tue, Oct 27, 2015 at 6:48 AM, Ariel Rokem <arokem at gmail.com>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>> Oh, one more:
>>>>>>>>>>>>>
>>>>>>>>>>>>> On Tue, Oct 27, 2015 at 6:40 AM, Ariel Rokem <arokem at gmail.com
>>>>>>>>>>>>> > wrote:
>>>>>>>>>>>>>
>>>>>>>>>>>>>> Hi Vanessa,
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> I have a few comments/suggestions:
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> 1. I would rather not have the front page be the project
>>>>>>>>>>>>>> directory. In my opinion, the front page should instead explain briefly
>>>>>>>>>>>>>> what this is, and lead visitors to the various other parts of the website.
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> 2. There are a few issues with formatting in the Code of
>>>>>>>>>>>>>> Conduct page (bullet points appear as continued lines)
>>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>> 3. Please include mindboggle in the project directory (it's
>>>>>>>>>>>>> been recently added!).
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>>> Other than these two, I think this is ready to be introduced
>>>>>>>>>>>>>> as a PR against the nipy/nipy.github.com repository (you
>>>>>>>>>>>>>> don't need any admin rights to do that, but I also just added you to "team
>>>>>>>>>>>>>> blog" on the github nipy org, so you can even do the merge yourself, if you
>>>>>>>>>>>>>> want).
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Cheers,
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Ariel
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> On Mon, Oct 26, 2015 at 12:56 PM, vanessa sochat <
>>>>>>>>>>>>>> vsochat at stanford.edu> wrote:
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Hi Eleftherios,
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> It definitely would be possible! I'm not any sort of admin
>>>>>>>>>>>>>>> in the nipy space, so the farthest I could take it is having the repo for
>>>>>>>>>>>>>>> someone to deploy on nipy.github.io. The code is here:
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> https://github.com/vsoch/nipy-jekyll
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> and deployment on my github pages:
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> http://vsoch.github.io/nipy-jekyll/
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> I mostly stopped working on it because I accomplished all
>>>>>>>>>>>>>>> the things that I set out to do (jekyll site, preview on continuous
>>>>>>>>>>>>>>> integration with circle, standard ways to add new content, and an easy way
>>>>>>>>>>>>>>> to multiple ways to add content a la github
>>>>>>>>>>>>>>> <http://vsoch.github.io/nipy-jekyll/contribute.html>, or
>>>>>>>>>>>>>>> for those who aren't comfortable with pushing and pulling, la
>>>>>>>>>>>>>>> social media <http://neuroimaging.tumblr.com>). I think I
>>>>>>>>>>>>>>> had suggested moving forward for people to try out tumblr (and start
>>>>>>>>>>>>>>> contributing content!), and if people were happy, to move it over to the
>>>>>>>>>>>>>>> nipy repo. If the outcome of the work was not a desired solution, I was
>>>>>>>>>>>>>>> content to just let it be. However if there is interest, that is definitely
>>>>>>>>>>>>>>> still a possibility.
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Best,
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Vanessa
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> On Mon, Oct 26, 2015 at 12:34 PM, Eleftherios Garyfallidis <
>>>>>>>>>>>>>>> garyfallidis at gmail.com> wrote:
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Hi Vanessa and all,
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Would it be possible to switch to your much nicer new
>>>>>>>>>>>>>>>> website? I still see the older version being up.
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Do you have a plan for this? Or you waiting for some
>>>>>>>>>>>>>>>> feedback on our side?
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Best regards,
>>>>>>>>>>>>>>>> Eleftherios
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> On Wed, Sep 2, 2015 at 12:57 PM, Ben Cipollini <
>>>>>>>>>>>>>>>> bcipolli at ucsd.edu> wrote:
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> I think they're good for mobile sites. I think they're
>>>>>>>>>>>>>>>>> generally expanded by default on full screens, and compacted on mobile. So
>>>>>>>>>>>>>>>>> I suggest to keep it, but have a regular menu that's showing on full
>>>>>>>>>>>>>>>>> screens and hidden on mobile.
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> On Wed, Sep 2, 2015 at 9:51 AM, vanessa sochat <
>>>>>>>>>>>>>>>>> vsochat at stanford.edu> wrote:
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> That's a good suggestion, and I'll add as an issue so I
>>>>>>>>>>>>>>>>>> can find it easily when the next round of changes comes around. Generally,
>>>>>>>>>>>>>>>>>> these "hamburger" menu things are useless functionality wise, and only
>>>>>>>>>>>>>>>>>> serve to aesthetically "get rid of the navigation" to have a clean looking
>>>>>>>>>>>>>>>>>> site. In our case, it is probably just annoying to have the extra clicks.
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> On Wed, Sep 2, 2015 at 8:50 AM, Ben Cipollini <
>>>>>>>>>>>>>>>>>> bcipolli at ucsd.edu> wrote:
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> This looks great. It's also cool to see "ask a question"
>>>>>>>>>>>>>>>>>>> integrated into the website, though we'll still have to hash things out for
>>>>>>>>>>>>>>>>>>> that.
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> Rather than open a github issue (which few may see),
>>>>>>>>>>>>>>>>>>> I'll make a suggestion here: can we have the menu expanded by default when
>>>>>>>>>>>>>>>>>>> accessing via a full-size screen?
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> It feels odd to me to have to expand the menu in order
>>>>>>>>>>>>>>>>>>> to navigate anywhere, by default. To me, navigation options should be
>>>>>>>>>>>>>>>>>>> obvious, unless pressed for space.
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> On Sun, Aug 30, 2015 at 1:14 PM, vanessa sochat <
>>>>>>>>>>>>>>>>>>> vsochat at stanford.edu> wrote:
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>> Hi Everyone,
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>> I've finished work on the "contribute" page with my
>>>>>>>>>>>>>>>>>>>> thinking for how to contribute various content:
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>> http://vsoch.github.io/nipy-jekyll/contribute.html
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>> and as an example, put up a quick blog post:
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>> http://neuroimaging.tumblr.com/
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>> The old "example" blog posts are hidden (private) and
>>>>>>>>>>>>>>>>>>>> can be viewed if you are a contributor. I'd like to add anyone and everyone
>>>>>>>>>>>>>>>>>>>> interested to contribute as "official" contributors via tumblr - if you are
>>>>>>>>>>>>>>>>>>>> interested please send me your email address. I've already invited some of
>>>>>>>>>>>>>>>>>>>> you for which I know the email.
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>> Best,
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>> Vanessa
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>> --
>>>>>>>>>>>>>>>>>>>> Vanessa Villamia Sochat
>>>>>>>>>>>>>>>>>>>> Stanford University
>>>>>>>>>>>>>>>>>>>> (603) 321-0676
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> --
>>>>>>>>>>>>>>>>>> Vanessa Villamia Sochat
>>>>>>>>>>>>>>>>>> Stanford University
>>>>>>>>>>>>>>>>>> (603) 321-0676
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> --
>>>>>>>>>>>>>>> Vanessa Villamia Sochat
>>>>>>>>>>>>>>> Stanford University
>>>>>>>>>>>>>>> (603) 321-0676
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> --
>>>>>>>>>>>> Vanessa Villamia Sochat
>>>>>>>>>>>> Stanford University
>>>>>>>>>>>> (603) 321-0676
>>>>>>>>>>>>
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> Neuroimaging mailing list
>>>>>>>>>>> Neuroimaging at python.org
>>>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> --
>>>>>>>>>> Vanessa Villamia Sochat
>>>>>>>>>> Stanford University
>>>>>>>>>> (603) 321-0676
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> Vanessa Villamia Sochat
>>>>>>>>> Stanford University
>>>>>>>>> (603) 321-0676
>>>>>>>>>
>>>>>>>>> _______________________________________________
>>>>>>>>> Neuroimaging mailing list
>>>>>>>>> Neuroimaging at python.org
>>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>> Neuroimaging mailing list
>>>>>>>> Neuroimaging at python.org
>>>>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Vanessa Villamia Sochat
>>>>>>> Stanford University
>>>>>>> (603) 321-0676
>>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Vanessa Villamia Sochat
>>>>>> Stanford University
>>>>>> (603) 321-0676
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Vanessa Villamia Sochat
>>>>> Stanford University
>>>>> (603) 321-0676
>>>>>
>>>>> _______________________________________________
>>>>> Neuroimaging mailing list
>>>>> Neuroimaging at python.org
>>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>>
>>>>>
>>>>
>>>> _______________________________________________
>>>> Neuroimaging mailing list
>>>> Neuroimaging at python.org
>>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>>
>>>>
>>>
>>> _______________________________________________
>>> Neuroimaging mailing list
>>> Neuroimaging at python.org
>>> https://mail.python.org/mailman/listinfo/neuroimaging
>>>
>>>
>>
>> _______________________________________________
>> Neuroimaging mailing list
>> Neuroimaging at python.org
>> https://mail.python.org/mailman/listinfo/neuroimaging
>>
>>
>
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging
>
>
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