[Neuroimaging] compute_mask - algorithm changed?
Matthew Brett
matthew.brett at gmail.com
Tue Sep 29 02:13:40 CEST 2015
Hi guys,
One of our post-docs here was just asking about `nipy.labs.compute_mask`.
The docstring for that function has:
Compute and write the mask of an image based on the grey level
This is based on an heuristic proposed by T.Nichols:
find the least dense point of the histogram, between fractions
m and M of the total image histogram.
but I think the actual algorithm is:
* Sort values;
* Remove m from start and M from end of the sorted vector;
* Find the value to value difference;
* Use the value corresponding to the position of the largest
difference as a threshold.
Is that right? Did the algorithm change at some point?
Cheers,
Matthew
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