[Neuroimaging] Example code for NiBabel

[Matthew Brett]

Hi,

On Thu, Apr 21, 2016 at 9:36 AM, Simon Rushton <RushtonSK at cardiff.ac.uk> wrote:
> Hi All
>
>
>
> I’m new to doing analysis of fmri data using Python and NiBabel.  Could
> someone point me to some very simple code to get me started.  I’m thinking
> of a program just a few lines long that loads a 4D NIfTI file, thresholds
> each of the individual 3D volumes, and then saves the result out as a new 4D
> NIfTI file.  Some simple code like that would get me past all things like
> accessing data via memory pointers etc so I can start learning rather than
> just scratching my head!  And yes, I know that most of this is in the
> NiBabel documentation but I’m obviously not putting the snippets together
> correctly as my code doesn’t work…

Does this doc help?  http://nipy.org/nibabel/gettingstarted.html

Can you post what you have, and the error you are getting?

Thanks a lot,

Matthew