[Neuroimaging] Conversion of DICOM to Nifti1

Yaroslav Halchenko lists at onerussian.com
Mon Jun 13 10:44:01 EDT 2016

On Mon, 13 Jun 2016, Michael Dean wrote:

>    Trying to reconstruct an older code and was wondering if there are any
>    functions on dipy that converts DICO images into the Nifti1Image format or
>    not. If not, what would you recommend using in order to do this process?
>    Thanks for any advice!

There is a number of tools out there

$> apt-cache dicom nifti  # filtering output manually a bit
python-dcmstack - DICOM to Nifti conversion
dicomnifti - converts DICOM files into the NIfTI format
mriconvert - medical image file conversion utility
mrtrix - diffusion-weighted MRI white matter tractography
nifti2dicom - convert 3D medical images to DICOM 2D series
qnifti2dicom - convert 3D medical images to DICOM 2D series (gui)
mitools - view, convert and perform basic maths with medical image datasets
plastimatch - medical image reconstruction and registration
mricron - magnetic resonance image conversion, viewing and analysis
dcm2niix - converts DICOM and PAR/REC files into the NIfTI format
heudiconv - DICOM converter with support for structure heuristics

try e.g.

recent version is within NeuroDebian happen you are using it

Yaroslav O. Halchenko
Center for Open Neuroscience     http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik        

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