[Neuroimaging] Interest in modeling library for NiPy

[Demian Wassermann]

+1

--
Demian Wassermann, PhD
demian.wassermann at inria.fr
Associate Research Professor (CR1)
Athena Project Team
INRIA Sophia Antipolis - Méditerranée 
2004 route des lucioles - FR-06902 



> On 4 Nov 2016, at 17:49, Matthew Brett <matthew.brett at gmail.com> wrote:
> 
> Hi,
> 
>> On Fri, Nov 4, 2016 at 7:50 AM, Marmaduke Woodman <mmwoodman at gmail.com> wrote:
>> hi
>> 
>> I'm writing to poll for interest in a community oriented, NiPy-brand
>> modeling library [1], for generic dynamical systems models such as those in
>> DCM but also more realistic models e.g.  neural mass models, DWI connectome
>> based networks thereof, forward models for fMRI/EEG/MEG. Methods therein
>> would include both forward simulation schemes (Euler-Maruyama etc) and model
>> inversion using e.g. HMC or variational schemes in PyMC3.
>> 
>> Most these elements are already implemented, across various NiPy libs and
>> TVB, but the
>> hope would be to make their cross-section, ie. nonlinear dynamical network
>> modeling, a more accessible tool in the neuroimaging toolbox, by forming a
>> library bringing all those elements together.
>> 
>> 
>> Any questions, suggestions, criticisms are welcome.
> 
> That would be excellent!
> 
> How can we help?
> 
> Best,
> 
> Matthew
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