[Neuroimaging] Interest in modeling library for NiPy

[Nina de Lacy]

+ another 1

On Fri, 4 Nov 2016, JB Poline wrote:

> Yes, this would great!
> JB
>
> On 4 November 2016 at 10:09, Demian Wassermann
> <demian.wassermann at inria.fr> wrote:
>> +1
>>
>> --
>> Demian Wassermann, PhD
>> demian.wassermann at inria.fr
>> Associate Research Professor (CR1)
>> Athena Project Team
>> INRIA Sophia Antipolis - Méditerranée
>> 2004 route des lucioles - FR-06902
>>
>>
>>
>> On 4 Nov 2016, at 17:49, Matthew Brett <matthew.brett at gmail.com> wrote:
>>
>> Hi,
>>
>> On Fri, Nov 4, 2016 at 7:50 AM, Marmaduke Woodman <mmwoodman at gmail.com>
>> wrote:
>>
>> hi
>>
>>
>> I'm writing to poll for interest in a community oriented, NiPy-brand
>>
>> modeling library [1], for generic dynamical systems models such as those in
>>
>> DCM but also more realistic models e.g.  neural mass models, DWI connectome
>>
>> based networks thereof, forward models for fMRI/EEG/MEG. Methods therein
>>
>> would include both forward simulation schemes (Euler-Maruyama etc) and model
>>
>> inversion using e.g. HMC or variational schemes in PyMC3.
>>
>>
>> Most these elements are already implemented, across various NiPy libs and
>>
>> TVB, but the
>>
>> hope would be to make their cross-section, ie. nonlinear dynamical network
>>
>> modeling, a more accessible tool in the neuroimaging toolbox, by forming a
>>
>> library bringing all those elements together.
>>
>>
>>
>> Any questions, suggestions, criticisms are welcome.
>>
>>
>> That would be excellent!
>>
>> How can we help?
>>
>> Best,
>>
>> Matthew
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>>
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