[Neuroimaging] Slow node starts with nipype
ibmalone at gmail.com
Mon Oct 31 12:37:21 EDT 2016
On 31 October 2016 at 16:02, Satrajit Ghosh <satra at mit.edu> wrote:
> On Mon, Oct 31, 2016 at 11:54 AM, Ian Malone <ibmalone at gmail.com> wrote:
>> I've been given some nipype workflows to run, and I find that they
>> seem to go very slowly in between execution steps. For example, I'm
>> currently looking at the message:
>> Does anyone have suggestions for what might be happening? This is
>> using the MultiProc engine, storage is NFS.
> dear ian,
> there is a config option to sleep between nodes that was changed from 2s to
> 60s. you can reset that option to speed things up.
> you can set this to:
> wf_variable.config['execution']['poll_sleep_duraion'] = 2
That is so much better, thank you!
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