[Neuroimaging] writing gifti files

[Emma Robinson]

That's really helpful, thanks.

On 14 April 2017 at 21:41, Michiel Cottaar <Michiel.Cottaar at ndcn.ox.ac.uk>
wrote:

> Hi Emma,
>
> The problem is that wb_view only supports float32 while python likes to
> convert everything to float64. The produced gifti file opens normally in
> wb_view, when I convert your data to float32 just before creating the data
> arrays (see attached file).
>
> Michiel
>
> On 12/04/2017 09:54, Emma Robinson wrote:
>
> Hi
>
> I have a problem reading giftis that I write from nibabel. It works if I
> replace the data with data taken straight out of another gifti data array,
> but if I add a matrix of floats I am unable to read it into the HCP's
> workbench viewer, not use the FSL gifti reader. I get the following error
> messages:
>
> from wb_view
>
> Parse Error while reading /vol/medic01/users/ecr05/TESTINGRESULT2.func.gii:
> Decoding of GZip Base64 Binary data failed.Decoded 0 bytes but should be 0
> bytes. line number: 15 column number: 68831
>
> from FSL
>
> terminate called after throwing an instance of 'GiftiException'
>  what():  Requested non-float data from float GIFTI field
>
> I've attached some test code and the gifti file I tested it with. Any
> suggestions of how to fix this would be appreciated, thanks
>
> Emma
>
>
> _______________________________________________
> Neuroimaging mailing listNeuroimaging at python.orghttps://mail.python.org/mailman/listinfo/neuroimaging
>
>
>
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.python.org/pipermail/neuroimaging/attachments/20170415/4378df9b/attachment.html>