[Neuroimaging] Extract XYZ coordinates in mm using nibabel

[shuang wu]

Hi there:

I am recently using the nibabel (nib) package in python to try to extract
the information from .img file. I use nib.load.get_data() to extract the
intensity values from the img file, but I do not know how to extract those
corresponding xyz coordinates in mm.

In Matlab, I can use [Y, xyz] = spm_read_vols(vol) to extract both the
intensity values Y and the coordinates xyz in mm.

Is there anyway to do the same thing using python?

Thanks in advance for any help!

Best,

Shuang(Sam) Wu, MS
Applied Mathematics Department
University of Washington
shuanw at uw.edu
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.python.org/pipermail/neuroimaging/attachments/20170123/99143a04/attachment.html>