[Neuroimaging] [nipype] Problems with SGEGraph plugin

Tom Wright tom at maladmin.com
Wed Jun 14 14:49:01 EDT 2017

Hi All,
I hope someone has seen this before. I have a workflow that works fine on a
single computer. However when I submit to the cluster all jobs fail:

$ cat
Could not find platform independent libraries <prefix>
Could not find platform dependent libraries <exec_prefix>
Consider setting $PYTHONHOME to <prefix>[:<exec_prefix>]
Fatal Python error: Py_Initialize: Unable to get the locale encoding
ModuleNotFoundError: No module named 'encodings'

Current thread 0x00002b91eeea9400 (most recent call first):
/var/spool/gridengine/execd/mansfield/job_scripts/944321: line 6: 19024
Aborted                 (core dumped)

python / nipype etc. is setup in a virtualenv which has been made

Thanks for any advice.
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