[Neuroimaging] Integrating Freesurfer with Python

[Maksimovskiy, Arkadiy]

Hi Everyone,

My apologies for the basic question. I am a beginner at integrating Freesurfer commands into python scripts, and was wondering if anyone has suggestions on what would be the best way to do it. Specifically, for a python program that uses Freesurfer commands, is it possible to source Freesurfer within the python script and then use the commands? Or does sourcing the environment need to happen prior to running such scripts?

Any information would be greatly appreciated.

Thank you,
Arkadiy


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