[Neuroimaging] computing cluster size thresholds

Christophe Pallier christophe at pallier.org
Tue Nov 13 10:06:35 EST 2018

Dear all,

I am using nistats to perform a second level group analysis

I'd like to estimate the fwhm from the model's residuals to use afni's
3dFWHMx and 3dCLustSim to look at the distribution of cluster size under
the Null.

Is there a simple way to save a map of the residuals?

Or is there even a better idea ?

Christophe Pallier <christophe at pallier.org>
INSERM-CEA Cognitive Neuroimaging Lab, Neurospin, bat 145,
91191 Gif-sur-Yvette Cedex, France
Tel: 00 33 1 69 08 79 34
Personal web site: http://www.pallier.org
Lab web site: http://www.unicog.org
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