[Neuroimaging] metrics on bundles in dipy

Alexandra Badea, Ph.D. alexandra.badea at duke.edu
Thu Jan 10 14:04:05 EST 2019

Great news, thanks much Ariel!


From: Neuroimaging <neuroimaging-bounces+alexandra.badea=duke.edu at python.org> on behalf of Ariel Rokem <arokem at gmail.com>
Reply-To: Neuroimaging analysis in Python <neuroimaging at python.org>
Date: Thursday, January 10, 2019 at 1:48 PM
To: Neuroimaging analysis in Python <neuroimaging at python.org>
Subject: Re: [Neuroimaging] metrics on bundles in dipy

Hi Alexandra,

There's a work-in-progress pull request implementing something like this: https://github.com/nipy/dipy/pull/1695<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_nipy_dipy_pull_1695&d=DwMFaQ&c=imBPVzF25OnBgGmVOlcsiEgHoG1i6YHLR0Sj_gZ4adc&r=UQt1LXgkyi1oV3SGw0TEAX3QuV3b_wY3ZLvHmk-zBkg&m=e8XSvuBxwvDrvmUBn-J3jnIE9vqaPGBVRgWEBmTB_pA&s=pSq9E_q-sixc2rROc5WNiUncj-6D9UtRXcjt349zF6o&e=>

For the time being, you'll need to pull this branch down to get these features, but it should make it into the master branch soon, and hopefully into the next release.



On Wed, Jan 9, 2019 at 8:45 AM Alexandra Badea, Ph.D. <alexandra.badea at duke.edu<mailto:alexandra.badea at duke.edu>> wrote:
I am trying to use dipy to extract image associated metrics like FA on bundles. I guess this has already been implemented, and would be grateful for a pointer to the proper function.
Alternatively, will try and write a script to interpolate values from images to bundle centroids.
Many thanks,

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