[Neuroimaging] Extracting a network from a nifti with 6 others
Angus Campbell
angus.j.g.campbell at gmail.com
Sun Nov 24 21:09:13 EST 2019
I have a nifti file which contains 7 networks. I want to extract each one
as a seperate image so I can pull the zscore of each mni coordinate to make
a binary mask.
Is there any information in the header i have missed that would let me do
this? How can I pull the data I want out as an array?
*header=Buckner7net_img.header*
*print(header)<class 'nibabel.nifti1.Nifti1Header'> object,
endian='<'sizeof_hdr : 348data_type : b' 'db_name
: b' 'extents : 0session_error : 0regular
: b' 'dim_info : 32dim : [ 4 256 256 256 1 1
1 1]intent_p1 : 0.0intent_p2 : 0.0intent_p3 :
0.0intent_code : nonedatatype : float32bitpix :
32slice_start : 0pixdim : [-1. 1. 1. 1. 0. 0. 0.
0.]vox_offset : 0.0scl_slope : nanscl_inter :
nanslice_end : 0slice_code : unknownxyzt_units : 18cal_max
: 7.0cal_min : 0.0slice_duration : 0.0toffset :
0.0glmax : 0glmin : 0descrip : b'FreeSurfer
matlab
'aux_file : b' 'qform_code :
scannersform_code : scannerquatern_b : 0.0quatern_c :
0.70710677quatern_d : -0.70710677qoffset_x : 127.0qoffset_y
: -145.0qoffset_z : 147.0srow_x : [ -1. 0. 0.
127.]srow_y : [ 0. 0. 1. -145.]srow_z : [ 0.
-1. 0. 147.]intent_name : b'huh? 'magic :
b'n+1' *
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