[Neuroimaging] nipype interface not working

[Jörg Stadler]

Hi,

this should only print the command line.

jacobian.run()

should do the trick. The example is misleading.


Jörg

> Hi,
>
> I am trying to use ANTS module available in nipype interface. The
> example code is given below:
>
>  
>
> *from**nipype.interfaces.ants**import*CreateJacobianDeterminantImage
>
> *>>> *jacobian =CreateJacobianDeterminantImage()
>
> *>>> *jacobian.inputs.imageDimension =3
>
> *>>> *jacobian.inputs.deformationField ='ants_Warp.nii.gz'
>
> *>>> *jacobian.inputs.outputImage ='out_name.nii.gz'
>
> *>>> *jacobian.cmdline
>
>  
>
> The problem is that the code is not generating the output image and
> runs without popping any error message.
>
>  
>
> I am using spyder 4.1.3 to run this code.
>
>  
>
> Thanks for your positive suggestions in response.
>
>  
>
> Regards
>
> Qasim
>
>
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