[Neuroimaging] Query on fmriprep

Christophe Pallier christophe at pallier.org
Mon Mar 2 08:19:38 EST 2020

BIDS is not a file format but a convention to name and organize files (see
In BIDS, image files actually use the nifti (.nii) format.

Christophe Pallier (http://www.pallier.org)
INSERM Cognitive Neuroimaging Lab (http://www.unicog.org)

On Mon, Mar 2, 2020 at 1:31 PM JIAYING CHEN <missjy at connect.hku.hk> wrote:

> Hi,
> I’m dealing with frmiprep these days, and I met a problem not knowing how
> to deal with it. I followed the tutorials online to run fmriprep, but it
> seemed that it can only deal with files in BIDS format. In order to
> transform the files into BIDS format, I need to use .dcm files. However, I
> only have .nii files at hand, which seems like a half-processed one.
> Could you please tell me what to do regarding this issue? Your reply will
> be much appreciated.
> Best regards,
> Jiaying
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