[Neuroimaging] Query on fmriprep

Oscar Esteban code at oscaresteban.es
Mon Mar 23 13:15:48 EDT 2020

Hi Jiaying,

fMRIPrep only works on acquired data - i.e., if your files are somewhat
preprocessed other than defacing of anatomical images it won't work.

I think the BIDS Starter Kit
<https://github.com/bids-standard/bids-starter-kit> could help you navigate
through the conversion process. That said, you are right it will not be
straightforward if your data are already in NIfTI format - hopefully none
of the crucial metadata have been lost in the process.

For questions about BIDS or fMRIPrep, I would recommend


On Mon, Mar 2, 2020 at 4:31 AM JIAYING CHEN <missjy at connect.hku.hk> wrote:

> Hi,
> I’m dealing with frmiprep these days, and I met a problem not knowing how
> to deal with it. I followed the tutorials online to run fmriprep, but it
> seemed that it can only deal with files in BIDS format. In order to
> transform the files into BIDS format, I need to use .dcm files. However, I
> only have .nii files at hand, which seems like a half-processed one.
> Could you please tell me what to do regarding this issue? Your reply will
> be much appreciated.
> Best regards,
> Jiaying
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging
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