[Neuroimaging] Nibabel error
Sulantha Sanjeewa
sulantha.s at gmail.com
Tue Mar 31 17:03:36 EDT 2020
Can you try 'f' as a string ? Instead of a PosixPath object?
On Tue, Mar 31, 2020, 2:00 PM Anders Eklund <anders.eklund at liu.se> wrote:
> Hello,
>
> I get this error when I'm trying to use nibabel (2.5.1 I think), has
> anyone seen it before?
>
>
> In prepare_3d_tf_record_dataset
>
> img = nib.load(f)
>
> File
> "/home/andek67/.local/lib/python3.7/site-packages/nibabel/loadsave.py",
> line 47, in load
>
> is_valid, sniff = image_klass.path_maybe_image(filename, sniff)
>
> File
> "/home/andek67/.local/lib/python3.7/site-packages/nibabel/filebasedimages.py",
> line 500, in path_maybe_image
>
> klass._compressed_suffixes)
>
> File
> "/home/andek67/.local/lib/python3.7/site-packages/nibabel/filename_parser.py",
> line 265, in splitext_addext
>
> if endswith(filename, ext):
>
> File
> "/home/andek67/.local/lib/python3.7/site-packages/nibabel/filename_parser.py",
> line 223, in _iendswith
>
> return whole.lower().endswith(end.lower())
>
> AttributeError: 'PosixPath' object has no attribute 'lower'
>
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