[Neuroimaging] [ANN] MNE-Python 0.23

[bthirion]

Congratluations !
Bertrand

On 28/04/2021 11:39, Alexandre Gramfort wrote:
>
> Hello everyone,
>
> We are very pleased to announce the new 0.23 release of MNE-Python! 🎈🎈🎈
>
> This release includes 72 pull requests merged as part of our New 
> Developers Code Sprint in March, and more than a dozen 
> additional contributions from those new developers after the code sprint.
>
> Big thanks to all who participated! 😍🙏👩🏽‍💻
>
>
>     <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#A-few-highlights>A few
>     highlights
>
>
>       <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#General-infos>General
>       infos
>
>   * The MNE team has started offering regular fortnightly “office
>     ours” on Discord to answer user questions. The next office hour
>     will take place this Friday at 16:00 UTC. Come say “Hi!” at
>     https://discord.gg/2hF3V4yT9Q
>   * The community has now moved to a new forum to answer users’
>     questions and make announcements (e.g., when office hours will be)
>     at https://mne.discourse.group/.
>   * The documentation at https://mne.tools <https://mne.tools/> now
>     features a new theme. We are continuously working to improve
>     layout, usability, and accessibility of our documentation. If you
>     discover anything you don’t like, that just doesn’t work for you,
>     or that might present a barrier to some users, please do reach out
>     to us! We’re looking forward to receiving your feedback.
>
>
>       <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Usability>Usability
>
>   * Gone is the 15-character limitation for channel names when writing
>     FIFF files.
>   * Raw, Epochs, and Info objects now have a beautiful tabular
>     representation in Jupyter Notebooks.
>   * Ever wanted to add Annotations to individual channels? This is now
>     possible with the new |ch_names| parameter.
>   * Annotations can now be exported to a pandas DataFramevia
>     |Annotations.to_data_frame()|.
>   * Interested in summary descriptive statistics for all your
>     channels? Have a look at the new |Raw.describe()|.
>   * Epochs and Evoked now allow you to easily apply transformations to
>     their data using the brand-new |apply_function()| method.
>   * Epochs metadata can now be generated automatically from events
>     using |mne.epochs.make_metadata()|.
>   * Raw.get_data() now has a |units| parameter to return data in the
>     desired unit.
>
>
>       <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Visualization>Visualization
>
>   * Dark mode! 🦉 Source estimate plots can now detect the operating
>     system theme preferences and will apply a dark theme automatically
>     if the OS is currently in dark mode. Dark mode can also be
>     activated manually via the |theme| parameter of |mne.viz.Brain|.
>   * Much improved interactive 3D plots in Jupyter Notebooks. (We’re
>     still trying to get Jupyter Lab to work nicely as well – it
>     currently behaves rather erratically, though!)
>   * The new |silhouette| parameter of |mne.viz.Brain| can be used to
>     display sharp edges and to improve perception.
>
>
>       <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Source-imaging>Source
>       imaging
>
>   * New method |mne.Dipole.to_mni()| for more convenient conversion
>     from |Dipole.pos| to MNI.
>   * We have a new infant template MRI dataset downloader,
>     |mne.datasets.fetch_infant_template()|.
>   * Add digitizer information to |mne.io.read_raw_egi()|.
>   * We now allow reading digitization from files other than |*.fif| in
>     the coregistration GUI.
>   * We managed to speed up |mne.inverse_sparse.tf_mixed_norm()| using
>     STFT/ISTFT linearity.
>
>
>       <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Data-reading-and-writing>Data
>       reading and writing
>
>   * Moving over from EEGLAB? No problem! We’ve added support for
>     reading new (2021) EEGLAB file format.
>   * Moving back to EEGLAB? No problem either! You can now export Raw
>     and Epochs to the EEGLAB format, thanks to the new
>     |export()| methods and the |eeglabio|
>     <https://github.com/jackz314/eeglabio> package.
>   * |mne.channels.read_custom_montage()| got more versatile! It now
>     supports CSV, TSV, and XYZ support formats.
>   * StarStim / enobio NEDF files can now be read via
>     |mne.io.read_raw_nedf()|.
>
>
>       <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Channel-types>Channel
>       types
>
>   * There is now a new |dbs| channel type for deep brain stimulation
>     recordings.
>
>
>     <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Notable-API-changes>Notable
>     API changes
>
>   * |mne.beamformer.tf_dics()| has been deprecated
>   * The default of |real_filter=False| in
>     |mne.beamformer.make_dics()| will change to |True| in the next
>     version of MNE-Python.
>   * |mne.io.anonymize_info()| now also anonymizes the |sex| and
>     |hand| fields when |keep_his=False|.
>   * Evoked objects have gained a new |baseline| attribute that is
>     automatically assembled based on the baseline of the averaged Epochs.
>   * |mne.read_selection()| has been deprecated in favor of
>     |mne.read_vectorview_selection()|.
>   * Fitting ICA on baseline-corrected Epochs, and / or applying it on
>     baseline-corrected Epochs or Evoked data will now display a warning.
>
>
>     <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Full-changelog>Full
>     changelog
>
> For a full list of improvements and API changes, see:
>
> https://mne.tools/stable/whats_new.html#version-0-23
>
> Find the full documentation at https://mne.tools/
>
>
>     <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Installing-the-new-release>Installing
>     the new release
>
> Since quite a few things – including dependencies – have changed, we 
> recommend creating a new environment with a “fresh” installation. 
> Please follow the installation instructions on our website:
>
> https://mne.tools/stable/install/mne_python.html
>
>
>     <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Feedback>Feedback
>
> As usual, we welcome your bug reports, feature requests, critiques, 
> and contributions. Development takes place on GitHub. If you would 
> like to contribute, star the project, or just take a peek at the code, 
> visit https://github.com/mne-tools/mne-python.
>
> You may follow us on Twitter: https://twitter.com/mne_news
>
> We hope you will enjoy the new features and many, many small 
> improvements we have added, and are looking forward to receiving your 
> feedback.
>
> Stay safe and take care!
>
> The MNE-Python developers
>
>
>     <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Contributors>Contributors
>
> MNE-Python is a community-driven project. We are always very happy to 
> welcome new contributors of code and documentation! 41 people 
> contributed to this release, and 11 of them contributed for the very 
> first time – thank you so much for your time and effort, we truly 
> appreciate it!
>
> This is the list of contributors in alphabetical order (first-time 
> contributors marked with a “+”):
>
>   * Adam Li
>   * Alex Rockhill
>   * Alexandre Gramfort
>   * Ana Radanovic
>   * Andres Rodriguez +
>   * Anna Padee +
>   * Apoorva Karekal +
>   * Britta Westner
>   * Catalina Magalvan
>   * Christian Brodbeck
>   * Christian Mista
>   * Christian O’Reilly
>   * Christina Zhao
>   * Christopher J. Bailey
>   * Clemens Brunner
>   * Cora Kim +
>   * Daniel McCloy
>   * Denis A. Engemann
>   * Dominik Welke +
>   * Eduard Ort
>   * Enrico Varano +
>   * Eric Larson
>   * Erica Peterson +
>   * Evgenii Kalenkovich
>   * Felix Klotzsche +
>   * Giorgio Marinato
>   * Guillaume Favelier
>   * Jack Zhang+
>   * Jean-Remi King
>   * Johann Benerradi
>   * Joris Van den Bossche
>   * Judy D Zhu +
>   * Liberty Hamilton
>   * Luke Bloy
>   * Maggie Clarke +
>   * Mainak Jas
>   * Manorama Kadwani
>   * Marijn van Vliet
>   * Martin Schulz
>   * Matt Sanderson +
>   * Matteo Anelli +
>   * Nicolas Gensollen
>   * Ram Pari +
>   * Richard Höchenberger
>   * Richard Koehler +
>   * Robert Luke
>   * Rotem Falach +
>   * Sebastien Treguer
>   * Silvia Cotroneo +
>   * Stefan Appelhoff
>   * Steven Bierer
>   * Sumalyo Datta +
>   * Timon Merk
>   * Tristan Stenner
>   * Valerii Chirkov+
>   * Victoria Peterson
>   * Yu-Han Luo
>   * Zhi Zhang +
>
>
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