[Neuroimaging] [ANN] MNE-Python 0.23
bertrand.thirion at inria.fr
Wed Apr 28 05:59:03 EDT 2021
On 28/04/2021 11:39, Alexandre Gramfort wrote:
> Hello everyone,
> We are very pleased to announce the new 0.23 release of MNE-Python! 🎈🎈🎈
> This release includes 72 pull requests merged as part of our New
> Developers Code Sprint in March, and more than a dozen
> additional contributions from those new developers after the code sprint.
> Big thanks to all who participated! 😍🙏👩🏽💻
> <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#A-few-highlights>A few
> * The MNE team has started offering regular fortnightly “office
> ours” on Discord to answer user questions. The next office hour
> will take place this Friday at 16:00 UTC. Come say “Hi!” at
> * The community has now moved to a new forum to answer users’
> questions and make announcements (e.g., when office hours will be)
> at https://mne.discourse.group/.
> * The documentation at https://mne.tools <https://mne.tools/> now
> features a new theme. We are continuously working to improve
> layout, usability, and accessibility of our documentation. If you
> discover anything you don’t like, that just doesn’t work for you,
> or that might present a barrier to some users, please do reach out
> to us! We’re looking forward to receiving your feedback.
> * Gone is the 15-character limitation for channel names when writing
> FIFF files.
> * Raw, Epochs, and Info objects now have a beautiful tabular
> representation in Jupyter Notebooks.
> * Ever wanted to add Annotations to individual channels? This is now
> possible with the new |ch_names| parameter.
> * Annotations can now be exported to a pandas DataFramevia
> * Interested in summary descriptive statistics for all your
> channels? Have a look at the new |Raw.describe()|.
> * Epochs and Evoked now allow you to easily apply transformations to
> their data using the brand-new |apply_function()| method.
> * Epochs metadata can now be generated automatically from events
> using |mne.epochs.make_metadata()|.
> * Raw.get_data() now has a |units| parameter to return data in the
> desired unit.
> * Dark mode! 🦉 Source estimate plots can now detect the operating
> system theme preferences and will apply a dark theme automatically
> if the OS is currently in dark mode. Dark mode can also be
> activated manually via the |theme| parameter of |mne.viz.Brain|.
> * Much improved interactive 3D plots in Jupyter Notebooks. (We’re
> still trying to get Jupyter Lab to work nicely as well – it
> currently behaves rather erratically, though!)
> * The new |silhouette| parameter of |mne.viz.Brain| can be used to
> display sharp edges and to improve perception.
> * New method |mne.Dipole.to_mni()| for more convenient conversion
> from |Dipole.pos| to MNI.
> * We have a new infant template MRI dataset downloader,
> * Add digitizer information to |mne.io.read_raw_egi()|.
> * We now allow reading digitization from files other than |*.fif| in
> the coregistration GUI.
> * We managed to speed up |mne.inverse_sparse.tf_mixed_norm()| using
> STFT/ISTFT linearity.
> reading and writing
> * Moving over from EEGLAB? No problem! We’ve added support for
> reading new (2021) EEGLAB file format.
> * Moving back to EEGLAB? No problem either! You can now export Raw
> and Epochs to the EEGLAB format, thanks to the new
> |export()| methods and the |eeglabio|
> <https://github.com/jackz314/eeglabio> package.
> * |mne.channels.read_custom_montage()| got more versatile! It now
> supports CSV, TSV, and XYZ support formats.
> * StarStim / enobio NEDF files can now be read via
> * There is now a new |dbs| channel type for deep brain stimulation
> API changes
> * |mne.beamformer.tf_dics()| has been deprecated
> * The default of |real_filter=False| in
> |mne.beamformer.make_dics()| will change to |True| in the next
> version of MNE-Python.
> * |mne.io.anonymize_info()| now also anonymizes the |sex| and
> |hand| fields when |keep_his=False|.
> * Evoked objects have gained a new |baseline| attribute that is
> automatically assembled based on the baseline of the averaged Epochs.
> * |mne.read_selection()| has been deprecated in favor of
> * Fitting ICA on baseline-corrected Epochs, and / or applying it on
> baseline-corrected Epochs or Evoked data will now display a warning.
> For a full list of improvements and API changes, see:
> Find the full documentation at https://mne.tools/
> the new release
> Since quite a few things – including dependencies – have changed, we
> recommend creating a new environment with a “fresh” installation.
> Please follow the installation instructions on our website:
> As usual, we welcome your bug reports, feature requests, critiques,
> and contributions. Development takes place on GitHub. If you would
> like to contribute, star the project, or just take a peek at the code,
> visit https://github.com/mne-tools/mne-python.
> You may follow us on Twitter: https://twitter.com/mne_news
> We hope you will enjoy the new features and many, many small
> improvements we have added, and are looking forward to receiving your
> Stay safe and take care!
> The MNE-Python developers
> MNE-Python is a community-driven project. We are always very happy to
> welcome new contributors of code and documentation! 41 people
> contributed to this release, and 11 of them contributed for the very
> first time – thank you so much for your time and effort, we truly
> appreciate it!
> This is the list of contributors in alphabetical order (first-time
> contributors marked with a “+”):
> * Adam Li
> * Alex Rockhill
> * Alexandre Gramfort
> * Ana Radanovic
> * Andres Rodriguez +
> * Anna Padee +
> * Apoorva Karekal +
> * Britta Westner
> * Catalina Magalvan
> * Christian Brodbeck
> * Christian Mista
> * Christian O’Reilly
> * Christina Zhao
> * Christopher J. Bailey
> * Clemens Brunner
> * Cora Kim +
> * Daniel McCloy
> * Denis A. Engemann
> * Dominik Welke +
> * Eduard Ort
> * Enrico Varano +
> * Eric Larson
> * Erica Peterson +
> * Evgenii Kalenkovich
> * Felix Klotzsche +
> * Giorgio Marinato
> * Guillaume Favelier
> * Jack Zhang+
> * Jean-Remi King
> * Johann Benerradi
> * Joris Van den Bossche
> * Judy D Zhu +
> * Liberty Hamilton
> * Luke Bloy
> * Maggie Clarke +
> * Mainak Jas
> * Manorama Kadwani
> * Marijn van Vliet
> * Martin Schulz
> * Matt Sanderson +
> * Matteo Anelli +
> * Nicolas Gensollen
> * Ram Pari +
> * Richard Höchenberger
> * Richard Koehler +
> * Robert Luke
> * Rotem Falach +
> * Sebastien Treguer
> * Silvia Cotroneo +
> * Stefan Appelhoff
> * Steven Bierer
> * Sumalyo Datta +
> * Timon Merk
> * Tristan Stenner
> * Valerii Chirkov+
> * Victoria Peterson
> * Yu-Han Luo
> * Zhi Zhang +
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