[Neuroimaging] [ANN] MNE-Python 0.23

[Satrajit Ghosh]

yes congrats indeed!

cheers,

satra

On Wed, Apr 28, 2021 at 8:49 AM JB Poline <jbpoline at gmail.com> wrote:

> +1 on congrats !
> JB
>
> On Wed, Apr 28, 2021 at 5:59 AM bthirion <bertrand.thirion at inria.fr>
> wrote:
>
>> Congratluations !
>> Bertrand
>>
>> On 28/04/2021 11:39, Alexandre Gramfort wrote:
>>
>> Hello everyone,
>>
>> We are very pleased to announce the new 0.23 release of MNE-Python!
>> 🎈🎈🎈
>>
>> This release includes 72 pull requests merged as part of our New
>> Developers Code Sprint in March, and more than a dozen additional contributions
>> from those new developers after the code sprint.
>>
>> Big thanks to all who participated! 😍🙏👩🏽‍💻
>> <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#A-few-highlights>A few
>> highlights <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#General-infos>General
>> infos
>>
>>    - The MNE team has started offering regular fortnightly “office ours” on
>>    Discord to answer user questions. The next office hour will take place this
>>    Friday at 16:00 UTC. Come say “Hi!” at https://discord.gg/2hF3V4yT9Q
>>    - The community has now moved to a new forum to answer users’
>>    questions and make announcements (e.g., when office hours will be) at
>>    https://mne.discourse.group/.
>>    - The documentation at https://mne.tools now features a new theme. We
>>    are continuously working to improve layout, usability, and accessibility of
>>    our documentation. If you discover anything you don’t like, that just
>>    doesn’t work for you, or that might present a barrier to some users, please
>>    do reach out to us! We’re looking forward to receiving your feedback.
>>
>> <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Usability>Usability
>>
>>    - Gone is the 15-character limitation for channel names when writing
>>    FIFF files.
>>    - Raw, Epochs, and Info objects now have a beautiful tabular
>>    representation in Jupyter Notebooks.
>>    - Ever wanted to add Annotations to individual channels? This is now
>>    possible with the new ch_names parameter.
>>    - Annotations can now be exported to a pandas DataFramevia
>>    Annotations.to_data_frame().
>>    - Interested in summary descriptive statistics for all your channels?
>>    Have a look at the new Raw.describe().
>>    - Epochs and Evoked now allow you to easily apply transformations to
>>    their data using the brand-new apply_function() method.
>>    - Epochs metadata can now be generated automatically from events
>>    using mne.epochs.make_metadata().
>>    - Raw.get_data() now has a units parameter to return data in the
>>    desired unit.
>>
>> <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Visualization>Visualization
>>
>>    - Dark mode! 🦉 Source estimate plots can now detect the operating
>>    system theme preferences and will apply a dark theme automatically if the
>>    OS is currently in dark mode. Dark mode can also be activated manually via
>>    the theme parameter of mne.viz.Brain.
>>    - Much improved interactive 3D plots in Jupyter Notebooks. (We’re
>>    still trying to get Jupyter Lab to work nicely as well – it currently
>>    behaves rather erratically, though!)
>>    - The new silhouette parameter of mne.viz.Brain can be used to
>>    display sharp edges and to improve perception.
>>
>> <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Source-imaging>Source imaging
>>
>>    - New method mne.Dipole.to_mni() for more convenient conversion from
>>    Dipole.pos to MNI.
>>    - We have a new infant template MRI dataset downloader,
>>    mne.datasets.fetch_infant_template().
>>    - Add digitizer information to mne.io.read_raw_egi().
>>    - We now allow reading digitization from files other than *.fif in
>>    the coregistration GUI.
>>    - We managed to speed up mne.inverse_sparse.tf_mixed_norm() using
>>    STFT/ISTFT linearity.
>>
>> <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Data-reading-and-writing>Data
>> reading and writing
>>
>>    - Moving over from EEGLAB? No problem! We’ve added support for
>>    reading new (2021) EEGLAB file format.
>>    - Moving back to EEGLAB? No problem either! You can now export Raw
>>    and Epochs to the EEGLAB format, thanks to the new export() methods
>>    and the eeglabio <https://github.com/jackz314/eeglabio> package.
>>    - mne.channels.read_custom_montage() got more versatile! It now
>>    supports CSV, TSV, and XYZ support formats.
>>    - StarStim / enobio NEDF files can now be read via
>>    mne.io.read_raw_nedf().
>>
>> <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Channel-types>Channel types
>>
>>    - There is now a new dbs channel type for deep brain stimulation
>>    recordings.
>>
>> <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Notable-API-changes>Notable
>> API changes
>>
>>    - mne.beamformer.tf_dics() has been deprecated
>>    - The default of real_filter=False in mne.beamformer.make_dics() will
>>    change to True in the next version of MNE-Python.
>>    - mne.io.anonymize_info() now also anonymizes the sex and hand fields
>>    when keep_his=False.
>>    - Evoked objects have gained a new baseline attribute that is
>>    automatically assembled based on the baseline of the averaged Epochs.
>>    - mne.read_selection() has been deprecated in favor of
>>    mne.read_vectorview_selection().
>>    - Fitting ICA on baseline-corrected Epochs, and / or applying it on
>>    baseline-corrected Epochs or Evoked data will now display a warning.
>>
>> <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Full-changelog>Full changelog
>>
>> For a full list of improvements and API changes, see:
>>
>> https://mne.tools/stable/whats_new.html#version-0-23
>>
>> Find the full documentation at https://mne.tools/
>> <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Installing-the-new-release>Installing
>> the new release
>>
>> Since quite a few things – including dependencies – have changed, we
>> recommend creating a new environment with a “fresh” installation. Please
>> follow the installation instructions on our website:
>>
>> https://mne.tools/stable/install/mne_python.html
>> <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Feedback>Feedback
>>
>> As usual, we welcome your bug reports, feature requests, critiques, and
>> contributions. Development takes place on GitHub. If you would like to
>> contribute, star the project, or just take a peek at the code, visit
>> https://github.com/mne-tools/mne-python.
>>
>> You may follow us on Twitter: https://twitter.com/mne_news
>>
>> We hope you will enjoy the new features and many, many small improvements
>> we have added, and are looking forward to receiving your feedback.
>>
>> Stay safe and take care!
>>
>> The MNE-Python developers
>> <https://hackmd.io/vp4CQoASQCCfhUQFW-lUXQ#Contributors>Contributors
>>
>> MNE-Python is a community-driven project. We are always very happy to
>> welcome new contributors of code and documentation! 41 people contributed
>> to this release, and 11 of them contributed for the very first time – thank
>> you so much for your time and effort, we truly appreciate it!
>>
>> This is the list of contributors in alphabetical order (first-time
>> contributors marked with a “+”):
>>
>>    - Adam Li
>>    - Alex Rockhill
>>    - Alexandre Gramfort
>>    - Ana Radanovic
>>    - Andres Rodriguez +
>>    - Anna Padee +
>>    - Apoorva Karekal +
>>    - Britta Westner
>>    - Catalina Magalvan
>>    - Christian Brodbeck
>>    - Christian Mista
>>    - Christian O’Reilly
>>    - Christina Zhao
>>    - Christopher J. Bailey
>>    - Clemens Brunner
>>    - Cora Kim +
>>    - Daniel McCloy
>>    - Denis A. Engemann
>>    - Dominik Welke +
>>    - Eduard Ort
>>    - Enrico Varano +
>>    - Eric Larson
>>    - Erica Peterson +
>>    - Evgenii Kalenkovich
>>    - Felix Klotzsche +
>>    - Giorgio Marinato
>>    - Guillaume Favelier
>>    - Jack Zhang+
>>    - Jean-Remi King
>>    - Johann Benerradi
>>    - Joris Van den Bossche
>>    - Judy D Zhu +
>>    - Liberty Hamilton
>>    - Luke Bloy
>>    - Maggie Clarke +
>>    - Mainak Jas
>>    - Manorama Kadwani
>>    - Marijn van Vliet
>>    - Martin Schulz
>>    - Matt Sanderson +
>>    - Matteo Anelli +
>>    - Nicolas Gensollen
>>    - Ram Pari +
>>    - Richard Höchenberger
>>    - Richard Koehler +
>>    - Robert Luke
>>    - Rotem Falach +
>>    - Sebastien Treguer
>>    - Silvia Cotroneo +
>>    - Stefan Appelhoff
>>    - Steven Bierer
>>    - Sumalyo Datta +
>>    - Timon Merk
>>    - Tristan Stenner
>>    - Valerii Chirkov+
>>    - Victoria Peterson
>>    - Yu-Han Luo
>>    - Zhi Zhang +
>>
>>
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