From Marie-Eve.Hoeppli at cchmc.org  Thu Oct  7 12:52:51 2021
From: Marie-Eve.Hoeppli at cchmc.org (Michel, Marie-Eve)
Date: Thu, 7 Oct 2021 16:52:51 +0000
Subject: [Neuroimaging] parrec2nii error
Message-ID: <SN6PR01MB4160D1B73069D40A47A2C5E3A8B19@SN6PR01MB4160.prod.exchangelabs.com>

Hi,

I am trying to convert data using parrec2nii and I keep getting the following error:


File "/usr/local/bin/parrec2nii", line 5, in <module>

    from nibabel.parrec2nii_cmd import main

ImportError: No module named nibabel.parrec2nii_cmd

I confirmed that nibabel was installed and that the parrec2nii scripts are in the cmdline folder in the nibabel package.

Could you please let me know how to solve this?

Thanks,
Marie
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From matthew.brett at gmail.com  Thu Oct  7 14:07:31 2021
From: matthew.brett at gmail.com (Matthew Brett)
Date: Thu, 7 Oct 2021 19:07:31 +0100
Subject: [Neuroimaging] parrec2nii error
In-Reply-To: <SN6PR01MB4160D1B73069D40A47A2C5E3A8B19@SN6PR01MB4160.prod.exchangelabs.com>
References: <SN6PR01MB4160D1B73069D40A47A2C5E3A8B19@SN6PR01MB4160.prod.exchangelabs.com>
Message-ID: <CAH6Pt5qmwzdZLWuOHzVrceswG3Xjh-JcxC2fpw5Cy0N=9om=GQ@mail.gmail.com>

Hi,

We'll do our best!

How did you install Nibabel?

How did you install Python?

What operating system are you on?

Cheers,

Matthew

On Thu, Oct 7, 2021 at 6:41 PM Michel, Marie-Eve
<Marie-Eve.Hoeppli at cchmc.org> wrote:
>
> Hi,
>
> I am trying to convert data using parrec2nii and I keep getting the following error:
>
> File "/usr/local/bin/parrec2nii", line 5, in <module>
>
>     from nibabel.parrec2nii_cmd import main
>
> ImportError: No module named nibabel.parrec2nii_cmd
>
>
> I confirmed that nibabel was installed and that the parrec2nii scripts are in the cmdline folder in the nibabel package.
>
> Could you please let me know how to solve this?
>
> Thanks,
> Marie
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging

From matthew.brett at gmail.com  Mon Oct 11 06:23:45 2021
From: matthew.brett at gmail.com (Matthew Brett)
Date: Mon, 11 Oct 2021 11:23:45 +0100
Subject: [Neuroimaging] hello!
In-Reply-To: <CA+jBUMx1T4Juh6yaCFP9SfmCigjbf2cov52bJriFpjk-3+DbXA@mail.gmail.com>
References: <CA+jBUMx1T4Juh6yaCFP9SfmCigjbf2cov52bJriFpjk-3+DbXA@mail.gmail.com>
Message-ID: <CAH6Pt5ruCVsxxAVE1R1wG_z-3hHp4JQ9W4ByWg4yADLi5zCRcQ@mail.gmail.com>

Dear Will,

Thanks very much for emailing in - and sorry to be so slow to reply -
I have been stuck under various rocks for a few weeks, but I believe I
am out from under them now.

Can you say more about what you're interested in / working on, so we
can give you better suggestions?  How much time do you have?

Cheers,

Matthew

On Tue, Sep 28, 2021 at 5:13 PM Will Tirone <willtironedev at gmail.com> wrote:
>
> Hi all,
>
> This is Will Tirone, I recently found the NiPy package and would like to contribute. I have made a few contributions to SciPy in the past, and I am reading through the developer guidelines for NiPy now.
>
> If there are any low-hanging fruit bug fixes that need attention, please let me know. Otherwise, I will keep an eye on the issues page on GitHub for some good first timer issues.
>
> Best,
> Will
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging

From pestilli at utexas.edu  Mon Oct 11 17:58:02 2021
From: pestilli at utexas.edu (Franco Pestilli)
Date: Mon, 11 Oct 2021 16:58:02 -0500
Subject: [Neuroimaging] Postdoctoral Positions at UT Austin
Message-ID: <CAON1jmUsKoMMfuz17_W+04DxkX0ryN=d6C6S1ggBb_21W+CAWA@mail.gmail.com>

Dear Colleagues,

I would appreciate sharing the announcement below.

Postdoctoral positions are available in the Laboratory of Dr. Franco
Pestilli <https://liberalarts.utexas.edu/psychology/faculty/fp4834> in
the Department
of Psychology <https://liberalarts.utexas.edu/psychology/>, Center for
Perceptual Systems <https://liberalarts.utexas.edu/cps/> and Center for
Theoretical and Computational Neuroscience <https://ctcn.utexas.edu/> at
the University of Texas at Austin <https://www.utexas.edu/>.

The positions are funded by NIH and NSF awards and associated with projects
integrating the Brain Imaging Data Structure <https://bids.neuroimaging.io/>,
brainlife.io, OpenNeuro.org with EEG, MEG and MRI data.

The projects are in collaboration with:
- Russ Poldrack, Stanford University
<https://profiles.stanford.edu/russell-poldrack>
- Ted Satterthwaite, University of Pennsylvania
<https://www.med.upenn.edu/bbl/faculty-tsatterthwaithe.html>
- Ariel Rokem, The University of Washington, Seattle
<https://escience.washington.edu/people/ariel-rokem/>
- Oscar Esteban, University of Lausanne
<https://wp.unil.ch/connectomics/team/oscar-esteban/>
- Cyril Pernet, Copenhagen University Hospital <https://cpernet.github.io/>
- Robert Smith, Florey Institute of Neuroscience
<https://florey.edu.au/science-research/scientist-directory/dr-robert-smith>
- Eugene Duff, Imperial College London
<https://www.imperial.ac.uk/people/e.duff>
- Aina Puce, Indiana University
<https://psych.indiana.edu/directory/faculty/puce-aina.html>
- Nathalie George, Sorbonne Universit?
<https://institutducerveau-icm.org/fr/george-nathalie/>
- Guiomar Niso, Universidad Polit?cnica de Madrid <https://guiomarniso.com/>

A few words describing the projects:
- *The Brain Imaging Data Structure for Connectivity.* Expanding the
usability of the Brain Imaging Data Structure standard by developing the
formats necessary to describe advanced data derivatives related to brain
connections (diffusion imaging, tractography, tract-profiles, tractometry,
functional networks, and network models).
- *Integrating EEG and MEG data-processing Apps on brainlife.io
<http://brainlife.io>. *Develop powerful web services to Integrate EEG and
MEG data on brainlife.io so to allow standardization, reutilization and
automated visualization of data.
- *Deep and Shallow Machine-Learning for neuroimaging data analysis and
augmentation using brainlife.io <http://brainlife.io>. *Work on projects
related to the application of Machine-Learning algorithms to validate data
and process open datasets from OpenNeuro.org using
*software-as-service* reproducible
processing pipelines on brainlife.io

For more information please email: pestilli at utexas.edu

Best regards,

*FRANCO PESTILLI*, *Ph.D.* | *Associate Professor*
Department of Psychology
<https://liberalarts.utexas.edu/psychology/index.php> | College of Liberal
Arts <https://liberalarts.utexas.edu/> | The University of Texas at Austin
<https://www.utexas.edu/>
he/him | pestilli at utexas.edu | web
<https://liberalarts.utexas.edu/psychology/faculty/fp4834> | GitHub
<https://github.com/francopestilli> | brainlife.io
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From dan.lurie at berkeley.edu  Mon Oct 11 18:38:10 2021
From: dan.lurie at berkeley.edu (Dan Lurie)
Date: Mon, 11 Oct 2021 15:38:10 -0700
Subject: [Neuroimaging] Postdoctoral Positions at UT Austin
In-Reply-To: <f9dade01-7ccd-422b-8114-afac28cf2f63@Spark>
References: <CAON1jmUsKoMMfuz17_W+04DxkX0ryN=d6C6S1ggBb_21W+CAWA@mail.gmail.com>
 <f9dade01-7ccd-422b-8114-afac28cf2f63@Spark>
Message-ID: <ce37e5b1-18bb-4815-97c0-47e388b793ee@Spark>

Whoops! I thought I was replying directly, sorry for the mass email everyone.

Dan Lurie
Graduate Student
Department of Psychology
University of California, Berkeley
http://despolab.berkeley.edu/lurie
On Oct 11, 2021, 15:37 -0700, Dan Lurie <dan.lurie at berkeley.edu>, wrote:
> Dear Professor Pestilli,
>
> I am wondering if you would consider a remote candidates for these positions. I am passionate about working to improve reproducibility in neuroimaging, particularly in studies of brain connectivity. I will soon be finishing my PhD at UC Berkeley, but need to stay local for now due to family obligations. That said, if remote work with your group is an option, I?d be eager to chat with you. I?ve attached my CV.
>
> Thanks and take care,
> Dan
>
> Dan Lurie
> Graduate Student
> Department of Psychology
> University of California, Berkeley
> http://despolab.berkeley.edu/lurie
> On Oct 11, 2021, 15:23 -0700, Franco Pestilli <pestilli at utexas.edu>, wrote:
> > Dear Colleagues,
> >
> > I would appreciate sharing the announcement below.
> >
> > Postdoctoral positions are available in the Laboratory of Dr. Franco Pestilli in the Department of Psychology,?Center for Perceptual Systems and Center for Theoretical and Computational Neuroscience at the University of Texas at Austin.
> >
> > The positions are funded by NIH and NSF awards and associated with projects integrating the Brain Imaging Data Structure, brainlife.io, OpenNeuro.org with EEG, MEG and MRI data.
> >
> > The projects?are in collaboration with:
> > - Russ Poldrack, Stanford University
> > - Ted Satterthwaite, University of Pennsylvania
> > - Ariel Rokem, The University of Washington, Seattle
> > - Oscar Esteban, University of Lausanne
> > - Cyril Pernet, Copenhagen University Hospital
> > - Robert Smith, Florey Institute of Neuroscience
> > - Eugene Duff, Imperial College London
> > - Aina Puce, Indiana University
> > - Nathalie George,?Sorbonne Universit?
> > - Guiomar Niso, Universidad Polit?cnica de Madrid
> >
> > A few words describing the projects:
> > - The Brain Imaging Data Structure?for Connectivity. Expanding the usability of the Brain Imaging Data Structure standard by developing the formats necessary to describe advanced data derivatives related to brain connections (diffusion imaging, tractography, tract-profiles, tractometry, functional networks, and network models).
> > - Integrating EEG and MEG data-processing Apps on brainlife.io. Develop powerful web services to Integrate EEG and MEG data on brainlife.io so to allow standardization, reutilization and automated visualization of data.
> > - Deep and Shallow?Machine-Learning for neuroimaging data analysis and augmentation using brainlife.io. Work on projects related to the application of Machine-Learning algorithms to validate data and process open datasets from OpenNeuro.org using software-as-service?reproducible processing pipelines on brainlife.io
> >
> > > For more information please email:?pestilli at utexas.edu
> >
> > Best regards,
> >
> > FRANCO PESTILLI,?Ph.D.?|?Associate Professor
> > Department of Psychology?|?College of Liberal Arts?|?The University of Texas at Austin
> > he/him?| pestilli at utexas.edu?|?web?|?GitHub?|?brainlife.io
> > _______________________________________________
> > Neuroimaging mailing list
> > Neuroimaging at python.org
> > https://mail.python.org/mailman/listinfo/neuroimaging
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From markiewicz at stanford.edu  Thu Oct 21 12:54:38 2021
From: markiewicz at stanford.edu (Christopher Markiewicz)
Date: Thu, 21 Oct 2021 16:54:38 +0000
Subject: [Neuroimaging] Announcement: Nipy calendar
Message-ID: <MN2PR02MB67527DB5FCADE9356ECDE538A9BF9@MN2PR02MB6752.namprd02.prod.outlook.com>

Hi all,

I wanted to let everyone know I've created a public Google calendar for Nipy events and meetings: https://calendar.google.com/calendar/u/0?cid=ZjJwM3E5NWs1aHBiaHBpaTQ5czJoZWFpY3NAZ3JvdXAuY2FsZW5kYXIuZ29vZ2xlLmNvbQ

If you want write access to it, please let me know what email I should share it with.

I think we can construe relevant events pretty broadly, but if it turns out we need to set explicit parameters, there's also a thread on Discourse: https://nipy.discourse.group/t/announcement-meeting-calendar/83

Best,
--
Christopher J. Markiewicz, PhD
Center for Reproducible Neuroscience
Stanford University

From elef at indiana.edu  Thu Oct 21 13:28:46 2021
From: elef at indiana.edu (Eleftherios Garyfallidis)
Date: Thu, 21 Oct 2021 13:28:46 -0400
Subject: [Neuroimaging] Announcement: Nipy calendar
In-Reply-To: <MN2PR02MB67527DB5FCADE9356ECDE538A9BF9@MN2PR02MB6752.namprd02.prod.outlook.com>
References: <MN2PR02MB67527DB5FCADE9356ECDE538A9BF9@MN2PR02MB6752.namprd02.prod.outlook.com>
Message-ID: <CAN6JmWPo2f2tbqZ0LZoZ4wYu8BXU5Sf=giWQTkfZHboDj_EOSw@mail.gmail.com>

Hi Chris, is this a calendar for all NIPY projects?

On Thu, Oct 21, 2021 at 1:23 PM Christopher Markiewicz <
markiewicz at stanford.edu> wrote:

> Hi all,
>
> I wanted to let everyone know I've created a public Google calendar for
> Nipy events and meetings:
> https://calendar.google.com/calendar/u/0?cid=ZjJwM3E5NWs1aHBiaHBpaTQ5czJoZWFpY3NAZ3JvdXAuY2FsZW5kYXIuZ29vZ2xlLmNvbQ
>
> If you want write access to it, please let me know what email I should
> share it with.
>
> I think we can construe relevant events pretty broadly, but if it turns
> out we need to set explicit parameters, there's also a thread on Discourse:
> https://nipy.discourse.group/t/announcement-meeting-calendar/83
>
> Best,
> --
> Christopher J. Markiewicz, PhD
> Center for Reproducible Neuroscience
> Stanford University
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging
>
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From markiewicz at stanford.edu  Thu Oct 21 13:33:21 2021
From: markiewicz at stanford.edu (Christopher Markiewicz)
Date: Thu, 21 Oct 2021 17:33:21 +0000
Subject: [Neuroimaging] Announcement: Nipy calendar
In-Reply-To: <CAN6JmWPo2f2tbqZ0LZoZ4wYu8BXU5Sf=giWQTkfZHboDj_EOSw@mail.gmail.com>
References: <MN2PR02MB67527DB5FCADE9356ECDE538A9BF9@MN2PR02MB6752.namprd02.prod.outlook.com>
 <CAN6JmWPo2f2tbqZ0LZoZ4wYu8BXU5Sf=giWQTkfZHboDj_EOSw@mail.gmail.com>
Message-ID: <MN2PR02MB67529034C2D0F91EA5CD0212A9BF9@MN2PR02MB6752.namprd02.prod.outlook.com>

Hi Eleftherios,

Yes, my thought was to open it up to any nipy (and nipy-adjacent) projects.

Best,
Chris

________________________________________
From: Neuroimaging <neuroimaging-bounces+markiewicz=stanford.edu at python.org> on behalf of Eleftherios Garyfallidis <elef at indiana.edu>
Sent: Thursday, October 21, 2021 13:28
To: Neuroimaging analysis in Python
Subject: Re: [Neuroimaging] Announcement: Nipy calendar

Hi Chris, is this a calendar for all NIPY projects?

On Thu, Oct 21, 2021 at 1:23 PM Christopher Markiewicz <markiewicz at stanford.edu<mailto:markiewicz at stanford.edu>> wrote:
Hi all,

I wanted to let everyone know I've created a public Google calendar for Nipy events and meetings: https://calendar.google.com/calendar/u/0?cid=ZjJwM3E5NWs1aHBiaHBpaTQ5czJoZWFpY3NAZ3JvdXAuY2FsZW5kYXIuZ29vZ2xlLmNvbQ

If you want write access to it, please let me know what email I should share it with.

I think we can construe relevant events pretty broadly, but if it turns out we need to set explicit parameters, there's also a thread on Discourse: https://nipy.discourse.group/t/announcement-meeting-calendar/83

Best,
--
Christopher J. Markiewicz, PhD
Center for Reproducible Neuroscience
Stanford University
_______________________________________________
Neuroimaging mailing list
Neuroimaging at python.org<mailto:Neuroimaging at python.org>
https://mail.python.org/mailman/listinfo/neuroimaging

From arokem at gmail.com  Thu Oct 21 13:48:26 2021
From: arokem at gmail.com (Ariel Rokem)
Date: Thu, 21 Oct 2021 10:48:26 -0700
Subject: [Neuroimaging] Announcement: Nipy calendar
In-Reply-To: <MN2PR02MB67529034C2D0F91EA5CD0212A9BF9@MN2PR02MB6752.namprd02.prod.outlook.com>
References: <MN2PR02MB67527DB5FCADE9356ECDE538A9BF9@MN2PR02MB6752.namprd02.prod.outlook.com>
 <CAN6JmWPo2f2tbqZ0LZoZ4wYu8BXU5Sf=giWQTkfZHboDj_EOSw@mail.gmail.com>
 <MN2PR02MB67529034C2D0F91EA5CD0212A9BF9@MN2PR02MB6752.namprd02.prod.outlook.com>
Message-ID: <CA+X4w0wkGh=fx81j4Ua7McNTU0++2sQfesaGrtZHo+3P+oce-w@mail.gmail.com>

It would be great to be able to copy events from the DIPY calendar
(primarily our open zoom meetings) into this calendar.

Could you please add my gmail address to edit the calendar?

On Thu, Oct 21, 2021 at 10:37 AM Christopher Markiewicz <
markiewicz at stanford.edu> wrote:

> Hi Eleftherios,
>
> Yes, my thought was to open it up to any nipy (and nipy-adjacent) projects.
>
> Best,
> Chris
>
> ________________________________________
> From: Neuroimaging <neuroimaging-bounces+markiewicz=
> stanford.edu at python.org> on behalf of Eleftherios Garyfallidis <
> elef at indiana.edu>
> Sent: Thursday, October 21, 2021 13:28
> To: Neuroimaging analysis in Python
> Subject: Re: [Neuroimaging] Announcement: Nipy calendar
>
> Hi Chris, is this a calendar for all NIPY projects?
>
> On Thu, Oct 21, 2021 at 1:23 PM Christopher Markiewicz <
> markiewicz at stanford.edu<mailto:markiewicz at stanford.edu>> wrote:
> Hi all,
>
> I wanted to let everyone know I've created a public Google calendar for
> Nipy events and meetings:
> https://calendar.google.com/calendar/u/0?cid=ZjJwM3E5NWs1aHBiaHBpaTQ5czJoZWFpY3NAZ3JvdXAuY2FsZW5kYXIuZ29vZ2xlLmNvbQ
>
> If you want write access to it, please let me know what email I should
> share it with.
>
> I think we can construe relevant events pretty broadly, but if it turns
> out we need to set explicit parameters, there's also a thread on Discourse:
> https://nipy.discourse.group/t/announcement-meeting-calendar/83
>
> Best,
> --
> Christopher J. Markiewicz, PhD
> Center for Reproducible Neuroscience
> Stanford University
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org<mailto:Neuroimaging at python.org>
> https://mail.python.org/mailman/listinfo/neuroimaging
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging
>
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From elef at indiana.edu  Thu Oct 21 14:02:12 2021
From: elef at indiana.edu (Eleftherios Garyfallidis)
Date: Thu, 21 Oct 2021 14:02:12 -0400
Subject: [Neuroimaging] Announcement: Nipy calendar
In-Reply-To: <a4b9e5f4d8b644b18e019042b1b82a2b@DM5PR08MB3595.namprd08.prod.outlook.com>
References: <MN2PR02MB67527DB5FCADE9356ECDE538A9BF9@MN2PR02MB6752.namprd02.prod.outlook.com>
 <CAN6JmWPo2f2tbqZ0LZoZ4wYu8BXU5Sf=giWQTkfZHboDj_EOSw@mail.gmail.com>
 <MN2PR02MB67529034C2D0F91EA5CD0212A9BF9@MN2PR02MB6752.namprd02.prod.outlook.com>
 <a4b9e5f4d8b644b18e019042b1b82a2b@DM5PR08MB3595.namprd08.prod.outlook.com>
Message-ID: <CAN6JmWMpsK88QdWFAiTZ4k1gQ58wYQhCwejxVVGm_Be-09cC2A@mail.gmail.com>

Sounds good. Thank you Chris.  Ariel, it would be nice if we can automate
this process so that we do not need to copy events.

On Thu, Oct 21, 2021 at 1:49 PM Ariel Rokem <arokem at gmail.com> wrote:

> It would be great to be able to copy events from the DIPY calendar
> (primarily our open zoom meetings) into this calendar.
>
> Could you please add my gmail address to edit the calendar?
>
> On Thu, Oct 21, 2021 at 10:37 AM Christopher Markiewicz <
> markiewicz at stanford.edu> wrote:
>
>> Hi Eleftherios,
>>
>> Yes, my thought was to open it up to any nipy (and nipy-adjacent)
>> projects.
>>
>> Best,
>> Chris
>>
>> ________________________________________
>> From: Neuroimaging <neuroimaging-bounces+markiewicz=
>> stanford.edu at python.org> on behalf of Eleftherios Garyfallidis <
>> elef at indiana.edu>
>> Sent: Thursday, October 21, 2021 13:28
>> To: Neuroimaging analysis in Python
>> Subject: Re: [Neuroimaging] Announcement: Nipy calendar
>>
>> Hi Chris, is this a calendar for all NIPY projects?
>>
>> On Thu, Oct 21, 2021 at 1:23 PM Christopher Markiewicz <
>> markiewicz at stanford.edu<mailto:markiewicz at stanford.edu>> wrote:
>> Hi all,
>>
>> I wanted to let everyone know I've created a public Google calendar for
>> Nipy events and meetings:
>> https://calendar.google.com/calendar/u/0?cid=ZjJwM3E5NWs1aHBiaHBpaTQ5czJoZWFpY3NAZ3JvdXAuY2FsZW5kYXIuZ29vZ2xlLmNvbQ
>>
>> If you want write access to it, please let me know what email I should
>> share it with.
>>
>> I think we can construe relevant events pretty broadly, but if it turns
>> out we need to set explicit parameters, there's also a thread on Discourse:
>> https://nipy.discourse.group/t/announcement-meeting-calendar/83
>>
>> Best,
>> --
>> Christopher J. Markiewicz, PhD
>> Center for Reproducible Neuroscience
>> Stanford University
>> _______________________________________________
>> Neuroimaging mailing list
>> Neuroimaging at python.org<mailto:Neuroimaging at python.org>
>> https://mail.python.org/mailman/listinfo/neuroimaging
>> _______________________________________________
>> Neuroimaging mailing list
>> Neuroimaging at python.org
>> https://mail.python.org/mailman/listinfo/neuroimaging
>>
>
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From blaise.frederick at gmail.com  Thu Oct 21 19:31:03 2021
From: blaise.frederick at gmail.com (Blaise Frederick)
Date: Thu, 21 Oct 2021 19:31:03 -0400
Subject: [Neuroimaging] Announcement: Nipy calendar
In-Reply-To: <MN2PR02MB67527DB5FCADE9356ECDE538A9BF9@MN2PR02MB6752.namprd02.prod.outlook.com>
References: <MN2PR02MB67527DB5FCADE9356ECDE538A9BF9@MN2PR02MB6752.namprd02.prod.outlook.com>
Message-ID: <795ECBD3-B7B4-4F27-9823-1BADA8733CDA@gmail.com>

Could you put me on?

Blaise.Frederick at gmail.com

Thanks,
Blaise

Any typos, strange phrasing, or whimsy are because autocorrect hates me. 

> On Oct 21, 2021, at 1:24 PM, Christopher Markiewicz <markiewicz at stanford.edu> wrote:
> 
> ?Hi all,
> 
> I wanted to let everyone know I've created a public Google calendar for Nipy events and meetings: https://calendar.google.com/calendar/u/0?cid=ZjJwM3E5NWs1aHBiaHBpaTQ5czJoZWFpY3NAZ3JvdXAuY2FsZW5kYXIuZ29vZ2xlLmNvbQ
> 
> If you want write access to it, please let me know what email I should share it with.
> 
> I think we can construe relevant events pretty broadly, but if it turns out we need to set explicit parameters, there's also a thread on Discourse: https://nipy.discourse.group/t/announcement-meeting-calendar/83
> 
> Best,
> --
> Christopher J. Markiewicz, PhD
> Center for Reproducible Neuroscience
> Stanford University
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging

From jbpoline at gmail.com  Thu Oct 21 21:03:33 2021
From: jbpoline at gmail.com (JB Poline)
Date: Thu, 21 Oct 2021 21:03:33 -0400
Subject: [Neuroimaging] Announcement: Nipy calendar
In-Reply-To: <795ECBD3-B7B4-4F27-9823-1BADA8733CDA@gmail.com>
References: <MN2PR02MB67527DB5FCADE9356ECDE538A9BF9@MN2PR02MB6752.namprd02.prod.outlook.com>
 <795ECBD3-B7B4-4F27-9823-1BADA8733CDA@gmail.com>
Message-ID: <CALMaa81SKhkDs+LCEuVd3HKp1f_Ka3CKyyQrY2pEzj2dtqMfTA@mail.gmail.com>

Happy to be on to put events I see
cheers
JB

On Thu, Oct 21, 2021 at 7:31 PM Blaise Frederick <blaise.frederick at gmail.com>
wrote:

> Could you put me on?
>
> Blaise.Frederick at gmail.com
>
> Thanks,
> Blaise
>
> Any typos, strange phrasing, or whimsy are because autocorrect hates me.
>
> > On Oct 21, 2021, at 1:24 PM, Christopher Markiewicz <
> markiewicz at stanford.edu> wrote:
> >
> > ?Hi all,
> >
> > I wanted to let everyone know I've created a public Google calendar for
> Nipy events and meetings:
> https://calendar.google.com/calendar/u/0?cid=ZjJwM3E5NWs1aHBiaHBpaTQ5czJoZWFpY3NAZ3JvdXAuY2FsZW5kYXIuZ29vZ2xlLmNvbQ
> >
> > If you want write access to it, please let me know what email I should
> share it with.
> >
> > I think we can construe relevant events pretty broadly, but if it turns
> out we need to set explicit parameters, there's also a thread on Discourse:
> https://nipy.discourse.group/t/announcement-meeting-calendar/83
> >
> > Best,
> > --
> > Christopher J. Markiewicz, PhD
> > Center for Reproducible Neuroscience
> > Stanford University
> > _______________________________________________
> > Neuroimaging mailing list
> > Neuroimaging at python.org
> > https://mail.python.org/mailman/listinfo/neuroimaging
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging
>
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From redhatw at gmail.com  Fri Oct 22 07:28:00 2021
From: redhatw at gmail.com (Ze Wang)
Date: Fri, 22 Oct 2021 11:28:00 +0000
Subject: [Neuroimaging] two postdoc jobs in University of Maryland School of
 Medicine
Message-ID: <em8ff0cc6b-1dda-443d-8e33-9ac540934110@laptop-cm30trfu>

Dear All,
       We are still collecting CVs for two postdoc positions, please 
share the information with any potential candidates.  Thank you very 
much!
Ze Wang



Two postdoc positions open in University of Maryland School of Medicine



A brief overview of our institute: UMSOM locates in the Inner Harbor 
Area, which is the most beautiful and the safest part of Baltimore. 
UMSOM is consistently growing in US News ranking (nearly one step up per 
year from #42 in 2006 to #27 in 2020). The total funding increased by 
74%. Our center: Center for Advanced Imaging Research (CAIR) was newly 
launched in 2018. The number of faculty and the total amount of fundings 
both nearly doubled in the past two years. In synchrony with the success 
of both SOM and CAIR, my laboratory is also rapidly expanding with a 
more than 2x increase of total funding since I started here 2.5 years 
ago.



Positions open in my lab. Now, thanks to the new NIH fundings, we have 
two positions open now in two different but related categories. We will 
start to review CVs in Nov but the positions will be open until filled 
by strong candidates.



We are looking for highly motivated postdoc research fellows in 
neuroimaging data processing. We are particularly interested in machine 
learning (including deep learning), time series analysis, and connectome 
analysis. One position is immediately available from Nov 2021. Another 
two will be available from Jan 2022 and we expect to finish this cycle 
of recruiting by July 2022. These positions will be supported by R01 
projects. Our overarching goals are to develop and evaluate deep 
learning-based method and new resting state fMRI processing strategies. 
Related projects ongoing in the lab include deep learning-based ASL 
perfusion MRI processing, brain entropy and coherence mapping. The ideal 
candidates should have method development experience in fMRI or 
neuroimaging signal processing. Background in electrical engineering, 
computer science, or mathematics is highly preferred. Python, Matlab 
programming skills are required. Experience on multi-band fMRI data 
processing is considered a plus.





Candidates for these positions are expected to have good communication 
skills and have good writing skills. We are willing to provide 
competitive salary.



Interested candidates should send CV and a brief introduction to Ze 
Wang: ze.wang at som.umaryland.edu.



Information about Dr. Wang?s lab can be found in:

https://www.medschool.umaryland.edu/cair/Principal-Investigators/Ze-Wang-PhD/.
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From redhatw at gmail.com  Fri Oct 22 14:35:07 2021
From: redhatw at gmail.com (Ze Wang)
Date: Fri, 22 Oct 2021 18:35:07 +0000
Subject: [Neuroimaging] two postdoc jobs in University of Maryland
 School of Medicine
In-Reply-To: <em8ff0cc6b-1dda-443d-8e33-9ac540934110@laptop-cm30trfu>
References: <em8ff0cc6b-1dda-443d-8e33-9ac540934110@laptop-cm30trfu>
Message-ID: <em70df8e6c-d661-4f0c-a865-52d8200beb85@laptop-cm30trfu>

Here is the updated web address to my lab 
https://www.medschool.umaryland.edu/pi/Ze-Wang-PhD/.
Special thank to Ariel for noticing the broken link in my previous 
email.
Sorry for double sending.
Thanks
Ze
------ Original Message ------
From: "Ze Wang" <redhatw at gmail.com>
To: "Neuroimaging analysis in Python" <neuroimaging at python.org>
Sent: 10/22/2021 7:28:00 AM
Subject: two postdoc jobs in University of Maryland School of Medicine

>Dear All,
>       We are still collecting CVs for two postdoc positions, please 
>share the information with any potential candidates.  Thank you very 
>much!
>Ze Wang
>
>
>
>Two postdoc positions open in University of Maryland School of Medicine
>
>
>
>A brief overview of our institute: UMSOM locates in the Inner Harbor 
>Area, which is the most beautiful and the safest part of Baltimore. 
>UMSOM is consistently growing in US News ranking (nearly one step up 
>per year from #42 in 2006 to #27 in 2020). The total funding increased 
>by 74%. Our center: Center for Advanced Imaging Research (CAIR) was 
>newly launched in 2018. The number of faculty and the total amount of 
>fundings both nearly doubled in the past two years. In synchrony with 
>the success of both SOM and CAIR, my laboratory is also rapidly 
>expanding with a more than 2x increase of total funding since I started 
>here 2.5 years ago.
>
>
>
>Positions open in my lab. Now, thanks to the new NIH fundings, we have 
>two positions open now in two different but related categories. We will 
>start to review CVs in Nov but the positions will be open until filled 
>by strong candidates.
>
>
>
>We are looking for highly motivated postdoc research fellows in 
>neuroimaging data processing. We are particularly interested in machine 
>learning (including deep learning), time series analysis, and 
>connectome analysis. One position is immediately available from Nov 
>2021. Another two will be available from Jan 2022 and we expect to 
>finish this cycle of recruiting by July 2022. These positions will be 
>supported by R01 projects. Our overarching goals are to develop and 
>evaluate deep learning-based method and new resting state fMRI 
>processing strategies. Related projects ongoing in the lab include deep 
>learning-based ASL perfusion MRI processing, brain entropy and 
>coherence mapping. The ideal candidates should have method development 
>experience in fMRI or neuroimaging signal processing. Background in 
>electrical engineering, computer science, or mathematics is highly 
>preferred. Python, Matlab programming skills are required. Experience 
>on multi-band fMRI data processing is considered a plus.
>
>
>
>
>
>Candidates for these positions are expected to have good communication 
>skills and have good writing skills. We are willing to provide 
>competitive salary.
>
>
>
>Interested candidates should send CV and a brief introduction to Ze 
>Wang: ze.wang at som.umaryland.edu.
>
>
>
>Information about Dr. Wang?s lab can be found in:
>
>https://www.medschool.umaryland.edu/cair/Principal-Investigators/Ze-Wang-PhD/.
>
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