From shlok at voxel.ai Wed Aug 10 12:15:30 2022 From: shlok at voxel.ai (Shlok Purani) Date: Wed, 10 Aug 2022 12:15:30 -0400 Subject: [Neuroimaging] [PySurfer] Message-ID: <1C14A5CD-5402-4B36-9AEB-131F0111E979@hxcore.ol> An HTML attachment was scrubbed... URL: From yasmin.mzayek at inria.fr Wed Aug 24 11:09:03 2022 From: yasmin.mzayek at inria.fr (Yasmin Mzayek) Date: Wed, 24 Aug 2022 17:09:03 +0200 (CEST) Subject: [Neuroimaging] Nilearn 0.9.2 is out! Message-ID: <235387127.2263332.1661353743690.JavaMail.zimbra@inria.fr> Dear all, I wanted to let you know that Nilearn 0.9.2 is now out! We have a new look for our documentation: [ https://nilearn.github.io/ | https://nilearn.github.io/ ] For all the latest updates and highlights of the new release see: [ https://nilearn.github.io/stable/changes/whats_new.html | What?s new - Nilearn ] Best regards, Yasmin and the Nilearn team -------------- next part -------------- An HTML attachment was scrubbed... URL: From papalea at pitt.edu Wed Aug 24 11:37:57 2022 From: papalea at pitt.edu (Papale, Andrew E) Date: Wed, 24 Aug 2022 15:37:57 +0000 Subject: [Neuroimaging] Fmriprep fails during nibabel after manual realignment to LPI Message-ID: Hi Neuroimaging Python Community, (This is my first post, so let me know if I?m doing this right) I had to manually reorient an image for this subject where the phase encoding direction was incorrect due to an overly steep obliquity to the bounding box. I used the following commands on the BIDS-converted nifti files (both sbref, BOLD) and also the field maps. fslorient -deleteorient fix_lpi.nii 3drefit -orient LPI fix_lpi.nii But I am getting this error when trying to run fmriprep like usual: [Graphical user interface, text, application Description automatically generated] Any advice? Thanks, Andrew -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: image001.png Type: image/png Size: 291120 bytes Desc: image001.png URL: