[Neuroimaging] [fmriprep] how to run ICA-AROMA after fmriprep

[Urs Kleinholdermann]

Dear all,

I'm relatively new to fMRI analysis and totally new to this list so 
apologies if my question is off-topic to this list or has been answered 
before.

I'd like to conduct ICA_AROMA on my fMRI data which has been 
preprocessed with fmriprep. Since the option to do this automagically 
has been removed from fmriprep and plans to conduct this in a separate 
workflow apparently are still waiting for implementation 
(https://github.com/nipreps/fmripost-aroma) I've tried to figure out how 
to do it manually but unfortunately have failed.  The files created by 
fmriprep do not seem to correspond to those expected as inputs by 
ICA_AROMA.py. Could someone perhaps tell me to how I can obtain the 
necessary files?

Thanks for your help!

Urs