[Numpy-discussion] FW: RE: Linux numpy 1.0.1 install failed

[Gong, Shawn (Contractor)]

Robert,
1) this is the first a few lines of the out.txt when I type 
"python setup.py install >out.txt" : 
(I'm not sure if "libraries mkl,vml,guide not found" means trouble or
not)

--------------------------------
F2PY Version 2_3473
blas_opt_info:
blas_mkl_info:
  libraries mkl,vml,guide not found in /home/sgong/dev/dist/lib
  libraries mkl,vml,guide not found in /usr/local/lib
  libraries mkl,vml,guide not found in /usr/lib
  NOT AVAILABLE

atlas_blas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in
/home/sgong/dev/dist/lib
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
  FOUND:
    libraries = ['ptf77blas', 'ptcblas', 'atlas']
    library_dirs = ['/usr/local/lib/atlas']
    language = c

Could not locate executable gfortran
Could not locate executable f95
customize GnuFCompiler
customize GnuFCompiler
customize GnuFCompiler using config
compiling '_configtest.c':

/* This file is generated from numpy_distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
  ATL_buildinfo();
  return 0;
}
C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -O3 -Wall
-Wstrict-prototypes -fPIC

compile options: '-c'
gcc: _configtest.c
gcc _configtest.o -L/usr/local/lib/atlas -lptf77blas -lptcblas -latlas
-o _configtest
ATLAS version 3.6.0 built by root on Mon May 14 15:46:37 EDT 2007:
   UNAME    : Linux srv25662-rde.ottawa.drdc-rddc.gc.ca
2.4.21-37.0.1.ELsmp #1 SMP Wed Jan 11 18:44:17 EST 2006 i686 i686 i386
GNU/Linux
   INSTFLG  : 
   MMDEF    : /usr/local/src/ATLAS/CONFIG/ARCHS/P4SSE2/gcc/gemm
   ARCHDEF  : /usr/local/src/ATLAS/CONFIG/ARCHS/P4SSE2/gcc/misc
   F2CDEFS  : -DAdd__ -DStringSunStyle
   CACHEEDGE: 1048576
   F77      : /usr/bin/g77, version GNU Fortran (GCC 3.2.3 20030502 (Red
Hat Linux 3.2.3-53)) 3.2.3 20030502 (Red Hat Linux 3.2.3-53)
   F77FLAGS : -fomit-frame-pointer -O
   CC       : /usr/bin/gcc, version gcc (GCC) 3.2.3 20030502 (Red Hat
Linux 3.2.3-53)
   CC FLAGS : -fomit-frame-pointer -O3 -funroll-all-loops
   MCC      : /usr/bin/gcc, version gcc (GCC) 3.2.3 20030502 (Red Hat
Linux 3.2.3-53)
   MCCFLAGS : -fomit-frame-pointer -O
success!
removing: _configtest.c _configtest.o _configtest
  FOUND:
    libraries = ['ptf77blas', 'ptcblas', 'atlas']
    library_dirs = ['/usr/local/lib/atlas']
    language = c
    define_macros = [('ATLAS_INFO', '"\\"3.6.0\\""')]

lapack_opt_info:
lapack_mkl_info:
mkl_info:
  libraries mkl,vml,guide not found in /home/sgong/dev/dist/lib
  libraries mkl,vml,guide not found in /usr/local/lib
  libraries mkl,vml,guide not found in /usr/lib
  NOT AVAILABLE
  NOT AVAILABLE
--------------------

2) Then in Python, when I type "import numpy"
It says: Running from numpy source directory
Then I type "numpy.sqrt(5)"
AttributeError: 'module' object has no attribute 'sqrt'
I assume that this means numpy was not installed successfully.

Thanks
Shawn



-----Original Message-----
From: numpy-discussion-bounces at scipy.org
[mailto:numpy-discussion-bounces at scipy.org] On Behalf Of Robert Kern
Sent: Tuesday, May 22, 2007 12:50 PM
To: Discussion of Numerical Python
Subject: Re: [Numpy-discussion] FW: RE: Linux numpy 1.0.1 install failed

Gong, Shawn (Contractor) wrote:
> Hi Robert,
> 
> I used exactly your text in site.cfg. The out.txt seems to get the
> lib_dir, but "import numpy" in python stills gives error.

*What* error? Please copy-and-paste the complete error message.

> Please see the attached files.
> Should I ask system guys to move the libs to /usr/lib so I don't have
to
> fight with site.cfg ?

Not until you tell us what the error message is.

-- 
Robert Kern

"I have come to believe that the whole world is an enigma, a harmless
enigma
 that is made terrible by our own mad attempt to interpret it as though
it had
 an underlying truth."
  -- Umberto Eco
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