[Numpy-discussion] installation issue with a non-standard location of a python build

Tue Jul 28 13:38:44 EDT 2009

On Tue, Jul 28, 2009 at 12:02 PM, David Cournapeau<cournape at gmail.com> wrote:
> On Wed, Jul 29, 2009 at 12:38 AM, Daniel
> Can you post the full output of python setup.py build ?

Here it is:

Running from numpy source directory.
non-existing path in 'numpy/distutils': 'site.cfg'
F2PY Version 2
blas_opt_info:
blas_mkl_info:
  libraries mkl,vml,guide not found in /users/wd15/usr/i686/4.0/lib
  libraries mkl,vml,guide not found in /usr/local/lib
  libraries mkl,vml,guide not found in /usr/lib
  NOT AVAILABLE

atlas_blas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in /users/wd15/usr/i686/4.0/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib/atlas
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib
  NOT AVAILABLE

atlas_blas_info:
  libraries f77blas,cblas,atlas not found in /users/wd15/usr/i686/4.0/lib
  libraries f77blas,cblas,atlas not found in /usr/local/lib
  libraries f77blas,cblas,atlas not found in /usr/lib/atlas
  FOUND:
    libraries = ['f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = c
    include_dirs = ['/usr/include']

/users/wd15/Documents/python/numpy-1.3.0/numpy/distutils/command/config.py:361:
DeprecationWarning:
+++++++++++++++++++++++++++++++++++++++++++++++++
Usage of get_output is deprecated: please do not
use it anymore, and avoid configuration checks
involving running executable on the target machine.
+++++++++++++++++++++++++++++++++++++++++++++++++

  DeprecationWarning)
customize GnuFCompiler
Found executable /usr/bin/g77
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler using config
compiling '_configtest.c':

/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
  ATL_buildinfo();
  return 0;
}
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3
-Wall -Wstrict-prototypes -fPIC

compile options: '-c'
gcc: _configtest.c
gcc: error trying to exec 'cc1': execvp: No such file or directory
gcc: error trying to exec 'cc1': execvp: No such file or directory
failure.
removing: _configtest.c _configtest.o
Status: 255
Output:
  FOUND:
    libraries = ['f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = c
    define_macros = [('NO_ATLAS_INFO', 2)]
    include_dirs = ['/usr/include']

lapack_opt_info:
lapack_mkl_info:
mkl_info:
  libraries mkl,vml,guide not found in /users/wd15/usr/i686/4.0/lib
  libraries mkl,vml,guide not found in /usr/local/lib
  libraries mkl,vml,guide not found in /usr/lib
  NOT AVAILABLE

  NOT AVAILABLE

atlas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in /users/wd15/usr/i686/4.0/lib
  libraries lapack_atlas not found in /users/wd15/usr/i686/4.0/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
  libraries lapack_atlas not found in /usr/local/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib/atlas
  libraries lapack_atlas not found in /usr/lib/atlas
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib
numpy.distutils.system_info.atlas_threads_info
  NOT AVAILABLE

atlas_info:
  libraries f77blas,cblas,atlas not found in /users/wd15/usr/i686/4.0/lib
  libraries lapack_atlas not found in /users/wd15/usr/i686/4.0/lib
  libraries f77blas,cblas,atlas not found in /usr/local/lib
  libraries lapack_atlas not found in /usr/local/lib
  libraries f77blas,cblas,atlas not found in /usr/lib/atlas
  libraries lapack_atlas not found in /usr/lib/atlas
numpy.distutils.system_info.atlas_info
  FOUND:
    libraries = ['lapack', 'f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = f77
    include_dirs = ['/usr/include']

customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler using config
compiling '_configtest.c':

/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
  ATL_buildinfo();
  return 0;
}
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3
-Wall -Wstrict-prototypes -fPIC

compile options: '-c'
gcc: _configtest.c
gcc: error trying to exec 'cc1': execvp: No such file or directory
gcc: error trying to exec 'cc1': execvp: No such file or directory
failure.
removing: _configtest.c _configtest.o
Status: 255
Output:
  FOUND:
    libraries = ['lapack', 'f77blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = f77
    define_macros = [('NO_ATLAS_INFO', 2)]
    include_dirs = ['/usr/include']

running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands
--compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands
--fcompiler options
running build_src
building py_modules sources
building library "npymath" sources
building extension "numpy.core._sort" sources
Generating build/src.linux-i686-2.6/numpy/core/include/numpy/config.h
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler using config
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3
-Wall -Wstrict-prototypes -fPIC

compile options: '-Inumpy/core/src -Inumpy/core/include
-I/users/wd15/usr/i686/4.0/include/python2.6 -c'
gcc: _configtest.c
gcc: error trying to exec 'cc1': execvp: No such file or directory
gcc: error trying to exec 'cc1': execvp: No such file or directory
failure.
removing: _configtest.c _configtest.o
Traceback (most recent call last):
  File "setup.py", line 172, in <module>
    setup_package()
  File "setup.py", line 165, in setup_package
    configuration=configuration )
  File "/users/wd15/Documents/python/numpy-1.3.0/numpy/distutils/core.py",
line 184, in setup
    return old_setup(**new_attr)
  File "/users/wd15/usr/i686/4.0/lib/python2.6/distutils/core.py",
line 152, in setup
    dist.run_commands()
  File "/users/wd15/usr/i686/4.0/lib/python2.6/distutils/dist.py",
line 975, in run_commands
    self.run_command(cmd)
  File "/users/wd15/usr/i686/4.0/lib/python2.6/distutils/dist.py",
line 995, in run_command
    cmd_obj.run()
  File "/users/wd15/Documents/python/numpy-1.3.0/numpy/distutils/command/build.py",
line 37, in run
    old_build.run(self)
  File "/users/wd15/usr/i686/4.0/lib/python2.6/distutils/command/build.py",
line 134, in run
    self.run_command(cmd_name)
  File "/users/wd15/usr/i686/4.0/lib/python2.6/distutils/cmd.py", line
333, in run_command
    self.distribution.run_command(command)
  File "/users/wd15/usr/i686/4.0/lib/python2.6/distutils/dist.py",
line 995, in run_command
    cmd_obj.run()
  File "/users/wd15/Documents/python/numpy-1.3.0/numpy/distutils/command/build_src.py",
line 130, in run
    self.build_sources()
  File "/users/wd15/Documents/python/numpy-1.3.0/numpy/distutils/command/build_src.py",
line 147, in build_sources
    self.build_extension_sources(ext)
  File "/users/wd15/Documents/python/numpy-1.3.0/numpy/distutils/command/build_src.py",
line 250, in build_extension_sources
    sources = self.generate_sources(sources, ext)
  File "/users/wd15/Documents/python/numpy-1.3.0/numpy/distutils/command/build_src.py",
line 307, in generate_sources
    source = func(extension, build_dir)
  File "numpy/core/setup.py", line 286, in generate_config_h
    moredefs, ignored = cocache.check_types(config_cmd, ext, build_dir)
  File "numpy/core/setup.py", line 30, in check_types
    out = check_types(*a, **kw)
  File "numpy/core/setup.py", line 186, in check_types
    "Cannot compiler 'Python.h'. Perhaps you need to "\
SystemError: Cannot compiler 'Python.h'. Perhaps you need to install
python-dev|python-devel.

-- 
Daniel Wheeler