[Numpy-discussion] FW: Numpy python build

[Padma TAN]

Hi,

Can I just install numpy and scipy without ATLAS? And what does this means "
gnu: no Fortran 90 compiler found"?

Im installing on RHEL

Thanks in advance!

[root at giswk002 numpy-1.3.0]# python setup.py build
Running from numpy source directory.
non-existing path in 'numpy/distutils': 'site.cfg'
F2PY Version 2
blas_opt_info:
blas_mkl_info:
  libraries mkl,vml,guide not found in /usr/local/Python-2.6.2/lib
  libraries mkl,vml,guide not found in /usr/local/lib
  libraries mkl,vml,guide not found in /usr/lib
  NOT AVAILABLE

atlas_blas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in /usr/local/Python-2.6.2/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib/sse2
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib
  NOT AVAILABLE

atlas_blas_info:
  libraries f77blas,cblas,atlas not found in /usr/local/Python-2.6.2/lib
  libraries f77blas,cblas,atlas not found in /usr/local/lib
  libraries f77blas,cblas,atlas not found in /usr/lib/sse2
  libraries f77blas,cblas,atlas not found in /usr/lib
  NOT AVAILABLE

/usr/local/numpy-1.3.0/numpy/distutils/system_info.py:1383: UserWarning:
    Atlas (http://math-atlas.sourceforge.net/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [atlas]) or by setting
    the ATLAS environment variable.
  warnings.warn(AtlasNotFoundError.__doc__)
blas_info:
  libraries blas not found in /usr/local/Python-2.6.2/lib
  libraries blas not found in /usr/local/lib
  FOUND:
    libraries = ['blas']
    library_dirs = ['/usr/lib']
    language = f77

  FOUND:
    libraries = ['blas']
    library_dirs = ['/usr/lib']
    define_macros = [('NO_ATLAS_INFO', 1)]
    language = f77

lapack_opt_info:
lapack_mkl_info:
mkl_info:
  libraries mkl,vml,guide not found in /usr/local/Python-2.6.2/lib
  libraries mkl,vml,guide not found in /usr/local/lib
  libraries mkl,vml,guide not found in /usr/lib
  NOT AVAILABLE

  NOT AVAILABLE

atlas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in /usr/local/Python-2.6.2/lib
  libraries lapack_atlas not found in /usr/local/Python-2.6.2/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
  libraries lapack_atlas not found in /usr/local/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib/sse2
  libraries lapack_atlas not found in /usr/lib/sse2
  libraries ptf77blas,ptcblas,atlas not found in /usr/lib
  libraries lapack_atlas not found in /usr/lib
numpy.distutils.system_info.atlas_threads_info
  NOT AVAILABLE

atlas_info:
  libraries f77blas,cblas,atlas not found in /usr/local/Python-2.6.2/lib
  libraries lapack_atlas not found in /usr/local/Python-2.6.2/lib
  libraries f77blas,cblas,atlas not found in /usr/local/lib
  libraries lapack_atlas not found in /usr/local/lib
  libraries f77blas,cblas,atlas not found in /usr/lib/sse2
  libraries lapack_atlas not found in /usr/lib/sse2
  libraries f77blas,cblas,atlas not found in /usr/lib
  libraries lapack_atlas not found in /usr/lib
numpy.distutils.system_info.atlas_info
  NOT AVAILABLE

/usr/local/numpy-1.3.0/numpy/distutils/system_info.py:1290: UserWarning:
    Atlas (http://math-atlas.sourceforge.net/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [atlas]) or by setting
    the ATLAS environment variable.
  warnings.warn(AtlasNotFoundError.__doc__)
lapack_info:
  libraries lapack not found in /usr/local/Python-2.6.2/lib
  libraries lapack not found in /usr/local/lib
  FOUND:
    libraries = ['lapack']
    library_dirs = ['/usr/lib']
    language = f77

  FOUND:
    libraries = ['lapack', 'blas']
    library_dirs = ['/usr/lib']
    define_macros = [('NO_ATLAS_INFO', 1)]
    language = f77

running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler
options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler
options
running build_src
building py_modules sources
building library "npymath" sources
building extension "numpy.core._sort" sources
  adding 'build/src.linux-i686-2.6/numpy/core/include/numpy/config.h' to
sources.
  adding 'build/src.linux-i686-2.6/numpy/core/include/numpy/numpyconfig.h'
to sources.
numpy/core/code_generators/genapi.py:9: DeprecationWarning: the md5 module
is deprecated; use hashlib instead
  import md5
executing numpy/core/code_generators/generate_numpy_api.py
  adding 
'build/src.linux-i686-2.6/numpy/core/include/numpy/__multiarray_api.h' to
sources.
numpy.core - nothing done with h_files =
['build/src.linux-i686-2.6/numpy/core/include/numpy/config.h',
'build/src.linux-i686-2.6/numpy/core/include/numpy/numpyconfig.h',
'build/src.linux-i686-2.6/numpy/core/include/numpy/__multiarray_api.h']
building extension "numpy.core.multiarray" sources
  adding 'build/src.linux-i686-2.6/numpy/core/include/numpy/config.h' to
sources.
  adding 'build/src.linux-i686-2.6/numpy/core/include/numpy/numpyconfig.h'
to sources.
executing numpy/core/code_generators/generate_numpy_api.py
  adding 
'build/src.linux-i686-2.6/numpy/core/include/numpy/__multiarray_api.h' to
sources.
  adding 'build/src.linux-i686-2.6/numpy/core/src' to include_dirs.
numpy.core - nothing done with h_files =
['build/src.linux-i686-2.6/numpy/core/src/scalartypes.inc',
'build/src.linux-i686-2.6/numpy/core/src/arraytypes.inc',
'build/src.linux-i686-2.6/numpy/core/include/numpy/config.h',
'build/src.linux-i686-2.6/numpy/core/include/numpy/numpyconfig.h',
'build/src.linux-i686-2.6/numpy/core/include/numpy/__multiarray_api.h']
building extension "numpy.core.umath" sources
  adding 'build/src.linux-i686-2.6/numpy/core/include/numpy/config.h' to
sources.
  adding 'build/src.linux-i686-2.6/numpy/core/include/numpy/numpyconfig.h'
to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
  adding 'build/src.linux-i686-2.6/numpy/core/include/numpy/__ufunc_api.h'
to sources.
  adding 'build/src.linux-i686-2.6/numpy/core/src' to include_dirs.
numpy.core - nothing done with h_files =
['build/src.linux-i686-2.6/numpy/core/src/scalartypes.inc',
'build/src.linux-i686-2.6/numpy/core/src/arraytypes.inc',
'build/src.linux-i686-2.6/numpy/core/src/umath_funcs.inc',
'build/src.linux-i686-2.6/numpy/core/src/umath_loops.inc',
'build/src.linux-i686-2.6/numpy/core/include/numpy/config.h',
'build/src.linux-i686-2.6/numpy/core/include/numpy/numpyconfig.h',
'build/src.linux-i686-2.6/numpy/core/include/numpy/__ufunc_api.h']
building extension "numpy.core.scalarmath" sources
  adding 'build/src.linux-i686-2.6/numpy/core/include/numpy/config.h' to
sources.
  adding 'build/src.linux-i686-2.6/numpy/core/include/numpy/numpyconfig.h'
to sources.
executing numpy/core/code_generators/generate_numpy_api.py
  adding 
'build/src.linux-i686-2.6/numpy/core/include/numpy/__multiarray_api.h' to
sources.
executing numpy/core/code_generators/generate_ufunc_api.py
  adding 'build/src.linux-i686-2.6/numpy/core/include/numpy/__ufunc_api.h'
to sources.
numpy.core - nothing done with h_files =
['build/src.linux-i686-2.6/numpy/core/include/numpy/config.h',
'build/src.linux-i686-2.6/numpy/core/include/numpy/numpyconfig.h',
'build/src.linux-i686-2.6/numpy/core/include/numpy/__multiarray_api.h',
'build/src.linux-i686-2.6/numpy/core/include/numpy/__ufunc_api.h']
building extension "numpy.core._dotblas" sources
building extension "numpy.core.umath_tests" sources
building extension "numpy.lib._compiled_base" sources
building extension "numpy.numarray._capi" sources
building extension "numpy.fft.fftpack_lite" sources
building extension "numpy.linalg.lapack_lite" sources
  adding 'numpy/linalg/lapack_litemodule.c' to sources.
  adding 'numpy/linalg/python_xerbla.c' to sources.
building extension "numpy.random.mtrand" sources
/usr/local/numpy-1.3.0/numpy/distutils/command/config.py:39:
DeprecationWarning:
+++++++++++++++++++++++++++++++++++++++++++++++++
Usage of try_run is deprecated: please do not
use it anymore, and avoid configuration checks
involving running executable on the target machine.
+++++++++++++++++++++++++++++++++++++++++++++++++

  DeprecationWarning)
customize GnuFCompiler
Found executable /usr/bin/g77
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler using config
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall
-Wstrict-prototypes -fPIC

compile options: '-Inumpy/core/src -Inumpy/core/include
-I/usr/local/Python-2.6.2/include/python2.6 -c'
gcc: _configtest.c
gcc -pthread _configtest.o -o _configtest
_configtest
failure.
removing: _configtest.c _configtest.o _configtest
building data_files sources
running build_py
copying numpy/version.py -> build/lib.linux-i686-2.6/numpy
copying build/src.linux-i686-2.6/numpy/__config__.py ->
build/lib.linux-i686-2.6/numpy
copying build/src.linux-i686-2.6/numpy/distutils/__config__.py ->
build/lib.linux-i686-2.6/numpy/distutils
running build_clib
customize UnixCCompiler
customize UnixCCompiler using build_clib
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler using build_ext
running scons
running build_scripts
  adding 'build/scripts.linux-i686-2.6/f2py' to scripts

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