[Numpy-discussion] problem installing numpy on Fedora

Charles R Harris charlesr.harris at gmail.com
Wed Apr 13 10:17:15 EDT 2011


On Wed, Apr 13, 2011 at 7:30 AM, c cook <csecook at gmail.com> wrote:

> Hello,
>
> I am trying to install numpy 1.6.0b2 version on Fedora and I am getting the
> following error:
>
> In file included from numpy/core/src/private/npy_config.h:4,
>                  from numpy/core/src/multiarray/common.c:8,
>                  from
> numpy/core/src/multiarray/multiarraymodule_onefile.c:8:
> build/src.linux-x86_64-2.4/numpy/core/include/numpy/config.h:34:1: warning:
> "HAVE_HYPOT" redefined
> In file included from /home/cse/Apps/Python-2.4/Include/Python.h:8,
>                  from numpy/core/src/multiarray/common.c:2,
>                  from
> numpy/core/src/multiarray/multiarraymodule_onefile.c:8:
> /home/cse/Apps/Python-2.4/pyconfig.h:232:1: warning: this is the location
> of the previous definition
> In file included from
> numpy/core/src/multiarray/multiarraymodule_onefile.c:14:
> numpy/core/src/multiarray/arraytypes.c.src: In function `VOID_getitem':
> numpy/core/src/multiarray/arraytypes.c.src:615: warning: label `finish'
> defined but not used
> In file included from
> numpy/core/src/multiarray/multiarraymodule_onefile.c:19:
> numpy/core/src/multiarray/descriptor.c: In function `descr_repeat':
> numpy/core/src/multiarray/descriptor.c:2840: warning: long int format,
> different type arg (arg 3)
> In file included from
> numpy/core/src/multiarray/multiarraymodule_onefile.c:27:
> numpy/core/src/multiarray/methods.c: In function `NpyArg_ParseKeywords':
> numpy/core/src/multiarray/methods.c:41: warning: passing arg 3 of
> `PyArg_VaParseTupleAndKeywords' discards qualifiers from pointer target type
> In file included from
> numpy/core/src/multiarray/multiarraymodule_onefile.c:28:
> numpy/core/src/multiarray/convert_datatype.c: In function
> `min_scalar_type_num':
> numpy/core/src/multiarray/convert_datatype.c:774: warning: comparison is
> always true due to limited range of data type
> numpy/core/src/multiarray/descriptor.c: In function
> `_convert_divisor_to_multiple':
> numpy/core/src/multiarray/descriptor.c:606: warning: 'q' might be used
> uninitialized in this function
> numpy/core/src/multiarray/einsum.c.src: In function
> `float_sum_of_products_contig_outstride0_one':
> numpy/core/src/multiarray/einsum.c.src:852: error: unrecognizable insn:
> (insn:HI 440 228 481 14
> /usr/lib/gcc/x86_64-redhat-linux/3.4.4/include/xmmintrin.h:915 (set (reg:SF
> 148)
>         (vec_select:SF (reg/v:V4SF 67 [ accum_sse ])
>             (parallel [
>                     (const_int 0 [0x0])
>                 ]))) -1 (insn_list 213 (nil))
>     (nil))
> numpy/core/src/multiarray/einsum.c.src:852: internal compiler error: in
> extract_insn, at recog.c:2083
> Please submit a full bug report,
> with preprocessed source if appropriate.
> See <URL:http://bugzilla.redhat.com/bugzilla> for instructions.
> Preprocessed source stored into /tmp/cck42rVN.out file, please attach this
> to your bugreport.
> In file included from numpy/core/src/private/npy_config.h:4,
>                  from numpy/core/src/multiarray/common.c:8,
>                  from
> numpy/core/src/multiarray/multiarraymodule_onefile.c:8:
> build/src.linux-x86_64-2.4/numpy/core/include/numpy/config.h:34:1: warning:
> "HAVE_HYPOT" redefined
> In file included from /home/cse/Apps/Python-2.4/Include/Python.h:8,
>                  from numpy/core/src/multiarray/common.c:2,
>                  from
> numpy/core/src/multiarray/multiarraymodule_onefile.c:8:
> /home/cse/Apps/Python-2.4/pyconfig.h:232:1: warning: this is the location
> of the previous definition
> In file included from
> numpy/core/src/multiarray/multiarraymodule_onefile.c:14:
> numpy/core/src/multiarray/arraytypes.c.src: In function `VOID_getitem':
> numpy/core/src/multiarray/arraytypes.c.src:615: warning: label `finish'
> defined but not used
> In file included from
> numpy/core/src/multiarray/multiarraymodule_onefile.c:19:
> numpy/core/src/multiarray/descriptor.c: In function `descr_repeat':
> numpy/core/src/multiarray/descriptor.c:2840: warning: long int format,
> different type arg (arg 3)
> In file included from
> numpy/core/src/multiarray/multiarraymodule_onefile.c:27:
> numpy/core/src/multiarray/methods.c: In function `NpyArg_ParseKeywords':
> numpy/core/src/multiarray/methods.c:41: warning: passing arg 3 of
> `PyArg_VaParseTupleAndKeywords' discards qualifiers from pointer target type
> In file included from
> numpy/core/src/multiarray/multiarraymodule_onefile.c:28:
> numpy/core/src/multiarray/convert_datatype.c: In function
> `min_scalar_type_num':
> numpy/core/src/multiarray/convert_datatype.c:774: warning: comparison is
> always true due to limited range of data type
> numpy/core/src/multiarray/descriptor.c: In function
> `_convert_divisor_to_multiple':
> numpy/core/src/multiarray/descriptor.c:606: warning: 'q' might be used
> uninitialized in this function
> numpy/core/src/multiarray/einsum.c.src: In function
> `float_sum_of_products_contig_outstride0_one':
> numpy/core/src/multiarray/einsum.c.src:852: error: unrecognizable insn:
> (insn:HI 440 228 481 14
> /usr/lib/gcc/x86_64-redhat-linux/3.4.4/include/xmmintrin.h:915 (set (reg:SF
> 148)
>         (vec_select:SF (reg/v:V4SF 67 [ accum_sse ])
>             (parallel [
>                     (const_int 0 [0x0])
>                 ]))) -1 (insn_list 213 (nil))
>     (nil))
> numpy/core/src/multiarray/einsum.c.src:852: internal compiler error: in
> extract_insn, at recog.c:2083
> Please submit a full bug report,
> with preprocessed source if appropriate.
> See <URL:http://bugzilla.redhat.com/bugzilla> for instructions.
> Preprocessed source stored into /tmp/cck42rVN.out file, please attach this
> to your bugreport.
> error: Command "gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall
> -Wstrict-prototypes -fPIC -Inumpy/core/include
> -Ibuild/src.linux-x86_64-2.4/numpy/core/include/numpy
> -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core
> -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath
> -Inumpy/core/include -I/home/cse/Apps/Python-2.4/Include
> -I/home/cse/Apps/Python-2.4
> -Ibuild/src.linux-x86_64-2.4/numpy/core/src/multiarray
> -Ibuild/src.linux-x86_64-2.4/numpy/core/src/umath -c
> numpy/core/src/multiarray/multiarraymodule_onefile.c -o
> build/temp.linux-x86_64-2.4/multiarraymodule_onefile.o" failed with exit
> status 1
>
>
> Any idea what is the problem?
>
>
I'll guess the combination of gcc-3.4.4, which is six years old, and the sse
instructions. It might be worth trying gcc-3.4.6 if you can't upgrade the
compiler outright.  Out of curiousity, what architecture and fedora version
are you using?

Chuck
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