[Numpy-discussion] Problem installing NumPy with Python 3.2.2/MacOS X 10.7.2
McNicol, Adam
amcnicol at longroad.ac.uk
Sun Dec 18 13:48:47 EST 2011
Hi Ralf,
Thanks for the response. I tried reinstalling Xcode 4.2.1 and the GCC/Fortran installer from http://r.research.att.com/tools/ (gcc-42-5666.3-darwin11.pkg) before installing the distribute package that you suggested.
I then reran the numpy installer being sure to enter the three export lines as suggested on the numpy installation guide for Lion.
Still no success. I guess I'll just have to wait for more official support for my configuration.
I have included the output from terminal just in case it is useful as there were a few lines in red that suggest something isn't quite right with something. I have placed ** before the lines that appear in red.
I appreciate the suggestions,
Thanks again,
Adam.
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
creating build
creating build/src.macosx-10.6-intel-3.2
creating build/src.macosx-10.6-intel-3.2/numpy
creating build/src.macosx-10.6-intel-3.2/numpy/distutils
building library "npymath" sources
customize NAGFCompiler
**Could not locate executable f95
customize AbsoftFCompiler
**Could not locate executable f90
**Could not locate executable f77
customize IBMFCompiler
**Could not locate executable xlf90
**Could not locate executable xlf
customize IntelFCompiler
**Could not locate executable fort
**Could not locate executable ifc
customize GnuFCompiler
**Could not locate executable g77
customize Gnu95FCompiler
**Could not locate executable gfortran
customize G95FCompiler
**Could not locate executable g95
customize PGroupFCompiler
**Could not locate executable pgf90
**Could not locate executable pgf77
**don't know how to compile Fortran code on platform 'posix'
C compiler: gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -O3 -isysroot /Developer/SDKs/MacOSX10.6.sdk -arch i386 -arch x86_64 -isysroot /Developer/SDKs/MacOSX10.6.sdk
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.2/include/python3.2m -c'
gcc-4.2: _configtest.c
gcc-4.2 _configtest.o -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
customize NAGFCompiler
customize AbsoftFCompiler
customize IBMFCompiler
customize IntelFCompiler
customize GnuFCompiler
customize Gnu95FCompiler
customize G95FCompiler
customize PGroupFCompiler
**don't know how to compile Fortran code on platform 'posix'
customize NAGFCompiler
customize AbsoftFCompiler
customize IBMFCompiler
customize IntelFCompiler
customize GnuFCompiler
customize Gnu95FCompiler
customize G95FCompiler
customize PGroupFCompiler
**don't know how to compile Fortran code on platform 'posix'
C compiler: gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -O3 -isysroot /Developer/SDKs/MacOSX10.6.sdk -arch i386 -arch x86_64 -isysroot /Developer/SDKs/MacOSX10.6.sdk
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.2/include/python3.2m -c'
gcc-4.2: _configtest.c
_configtest.c:1: warning: conflicting types for built-in function ‘exp’
_configtest.c:1: warning: conflicting types for built-in function ‘exp’
gcc-4.2 _configtest.o -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
creating build/src.macosx-10.6-intel-3.2/numpy/core
creating build/src.macosx-10.6-intel-3.2/numpy/core/src
creating build/src.macosx-10.6-intel-3.2/numpy/core/src/npymath
conv_template:> build/src.macosx-10.6-intel-3.2/numpy/core/src/npymath/npy_math.c
conv_template:> build/src.macosx-10.6-intel-3.2/numpy/core/src/npymath/ieee754.c
conv_template:> build/src.macosx-10.6-intel-3.2/numpy/core/src/npymath/npy_math_complex.c
building extension "numpy.core._sort" sources
Generating build/src.macosx-10.6-intel-3.2/numpy/core/include/numpy/config.h
customize NAGFCompiler
customize AbsoftFCompiler
customize IBMFCompiler
customize IntelFCompiler
customize GnuFCompiler
customize Gnu95FCompiler
customize G95FCompiler
customize PGroupFCompiler
**don't know how to compile Fortran code on platform 'posix'
customize NAGFCompiler
customize AbsoftFCompiler
customize IBMFCompiler
customize IntelFCompiler
customize GnuFCompiler
customize Gnu95FCompiler
customize G95FCompiler
customize PGroupFCompiler
**don't know how to compile Fortran code on platform 'posix'
C compiler: gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -O3 -isysroot /Developer/SDKs/MacOSX10.6.sdk -arch i386 -arch x86_64 -isysroot /Developer/SDKs/MacOSX10.6.sdk
compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.2/include/python3.2m -c'
gcc-4.2: _configtest.c
In file included from /Library/Frameworks/Python.framework/Versions/3.2/include/python3.2m/bytearrayobject.h:9,
from /Library/Frameworks/Python.framework/Versions/3.2/include/python3.2m/Python.h:73,
from _configtest.c:1:
/Developer/SDKs/MacOSX10.6.sdk/usr/include/stdarg.h:4:25: error: stdarg.h: No such file or directory
In file included from /Library/Frameworks/Python.framework/Versions/3.2/include/python3.2m/bytearrayobject.h:9,
from /Library/Frameworks/Python.framework/Versions/3.2/include/python3.2m/Python.h:73,
from _configtest.c:1:
/Developer/SDKs/MacOSX10.6.sdk/usr/include/stdarg.h:4:25: error: stdarg.h: No such file or directory
lipo: can't figure out the architecture type of: /var/folders/_c/z033hf1s1cgfcxtxfnpg0lsm0000gn/T//ccKv548x.out
In file included from /Library/Frameworks/Python.framework/Versions/3.2/include/python3.2m/bytearrayobject.h:9,
from /Library/Frameworks/Python.framework/Versions/3.2/include/python3.2m/Python.h:73,
from _configtest.c:1:
/Developer/SDKs/MacOSX10.6.sdk/usr/include/stdarg.h:4:25: error: stdarg.h: No such file or directory
In file included from /Library/Frameworks/Python.framework/Versions/3.2/include/python3.2m/bytearrayobject.h:9,
from /Library/Frameworks/Python.framework/Versions/3.2/include/python3.2m/Python.h:73,
from _configtest.c:1:
/Developer/SDKs/MacOSX10.6.sdk/usr/include/stdarg.h:4:25: error: stdarg.h: No such file or directory
lipo: can't figure out the architecture type of: /var/folders/_c/z033hf1s1cgfcxtxfnpg0lsm0000gn/T//ccKv548x.out
failure.
removing: _configtest.c _configtest.o
Running from numpy source directory.Traceback (most recent call last):
File "setup.py", line 196, in <module>
setup_package()
File "setup.py", line 189, in setup_package
configuration=configuration )
File "/Users/adammcnicol/Desktop/numpy-1.6.1/build/py3k/numpy/distutils/core.py", line 186, in setup
return old_setup(**new_attr)
File "/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/distutils/core.py", line 148, in setup
dist.run_commands()
File "/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/distutils/dist.py", line 917, in run_commands
self.run_command(cmd)
File "/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/distutils/dist.py", line 936, in run_command
cmd_obj.run()
File "/Users/adammcnicol/Desktop/numpy-1.6.1/build/py3k/numpy/distutils/command/build.py", line 37, in run
old_build.run(self)
File "/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/distutils/command/build.py", line 126, in run
self.run_command(cmd_name)
File "/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/distutils/dist.py", line 936, in run_command
cmd_obj.run()
File "/Users/adammcnicol/Desktop/numpy-1.6.1/build/py3k/numpy/distutils/command/build_src.py", line 152, in run
self.build_sources()
File "/Users/adammcnicol/Desktop/numpy-1.6.1/build/py3k/numpy/distutils/command/build_src.py", line 169, in build_sources
self.build_extension_sources(ext)
File "/Users/adammcnicol/Desktop/numpy-1.6.1/build/py3k/numpy/distutils/command/build_src.py", line 328, in build_extension_sources
sources = self.generate_sources(sources, ext)
File "/Users/adammcnicol/Desktop/numpy-1.6.1/build/py3k/numpy/distutils/command/build_src.py", line 385, in generate_sources
source = func(extension, build_dir)
File "numpy/core/setup.py", line 410, in generate_config_h
moredefs, ignored = cocache.check_types(config_cmd, ext, build_dir)
File "numpy/core/setup.py", line 41, in check_types
out = check_types(*a, **kw)
File "numpy/core/setup.py", line 271, in check_types
"Cannot compile 'Python.h'. Perhaps you need to "\
SystemError: Cannot compile 'Python.h'. Perhaps you need to install python-dev|python-devel.
Message: 3
Date: Sun, 18 Dec 2011 09:49:00 +0100
From: Ralf Gommers <ralf.gommers at googlemail.com>
Subject: Re: [Numpy-discussion] Problem installing NumPy with Python
3.2.2/MacOS X 10.7.2
To: Discussion of Numerical Python <numpy-discussion at scipy.org>
Message-ID:
<CABL7CQh-+t+6p5z_S_JVycRCB-FWK0Q3wiAWjazgmDp8AJkKqw at mail.gmail.com>
Content-Type: text/plain; charset="iso-8859-1"
On Sat, Dec 17, 2011 at 12:59 PM, McNicol, Adam <amcnicol at longroad.ac.uk>wrote:
> **
>
> Hi There,
>
> Thanks for the responses.
>
> At this point I would settle from just being able to install matplotlib.
> Even if some of the functionality isn't present currently that is fine.
>
> I'm afraid my knowledge of Python falls down about here as well. I
> installed Python 3.2.2 via the installer from Python.org so I have no idea
> whether Python.h is present or where indeed I would find it or how I would
> add it to the search path.
>
> Do I have to install from source or something like that?
>
No, your Python install should be fine if you just got the dmg installer
from python.org. I recommend you install the OS X SDKs and distribute (
http://pypi.python.org/pypi/distribute), as I said before, and try again to
compile numpy.
Unfortunately you have chosen a difficult combination of OS and Python
version, so we don't have binary installers you can use (yet).
Ralf
> Thanks again,
>
>
> Adam.
>
>
> -----Original Message-----
> From: McNicol, Adam
> Sent: Fri 12/16/2011 11:07 PM
> To: numpy-discussion at scipy.org
> Subject: Problem installing NumPy with Python 3.2.2/MacOS X 10.7.2
>
> Hi There,
>
> I am very new to numpy and have really only started investigating it as
> one of my students needs some functionality from matplotlib. I have managed
> to install everything under Windows for work in class but I use a Mac at
> home and have been struggling all night to get it to build and install.
>
> I should mention that I am using Python 3.2.2 both in school and at home
> and it isn't an option to use Python 2.7 as all of the rest of my class is
> taught in Python 3. I also have the most recent version of Xcode installed.
>
> I have installed the correct build of gcc-4.2 with Fortran (gcc-4.2 (Apple
> build 5666.3) with GNU Fortran 4.2.4 for Mac OS X 10.7 (Lion)) from
> http://r.research.att.com/tools/
>
> I then followed the install instructions but the build fails with the
> following message:
>
> File "numpy/core/setup.py", line 271, in check_types
> "Cannot compile 'Python.h'. Perhaps you need to "\
> SystemError: Cannot compile 'Python.h'. Perhaps you need to install
> python-dev|python-devel.
>
> I have got no idea what to do with this error message. Any help would be
> much appreciated.
>
> Kind Regards,
>
>
> Adam.
>
>
> _______________________________________________
> NumPy-Discussion mailing list
> NumPy-Discussion at scipy.org
> http://mail.scipy.org/mailman/listinfo/numpy-discussion
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://mail.scipy.org/pipermail/numpy-discussion/attachments/20111218/0747fb12/attachment-0001.html
------------------------------
_______________________________________________
NumPy-Discussion mailing list
NumPy-Discussion at scipy.org
http://mail.scipy.org/mailman/listinfo/numpy-discussion
End of NumPy-Discussion Digest, Vol 63, Issue 54
************************************************
-------------- next part --------------
A non-text attachment was scrubbed...
Name: winmail.dat
Type: application/ms-tnef
Size: 7394 bytes
Desc: not available
URL: <http://mail.python.org/pipermail/numpy-discussion/attachments/20111218/02269314/attachment.bin>
More information about the NumPy-Discussion
mailing list