[Numpy-discussion] Numpy - MKL - build error
Igor Ying
igor.ying at yahoo.com
Wed Sep 14 05:41:27 EDT 2011
My bad, iomp5md is in compiler/lib dir, I copied it to the mkl dir and it worked.
________________________________
From: Igor Ying <igor.ying at yahoo.com>
To: "numpy-discussion at scipy.org" <numpy-discussion at scipy.org>
Sent: Wednesday, September 14, 2011 1:07 PM
Subject: Re: Numpy - MKL - build error
Yes, they all are present in that directory. Also, I tried with root as login.
-r-xr-xr-x 1 root root 26342559 Aug 9 22:19 libmkl_avx.so
-r--r--r-- 1 root root 1190224 Aug 9 22:26 libmkl_blacs_ilp64.a
-r--r--r-- 1 root root 1191496 Aug 9 22:25 libmkl_blacs_intelmpi_ilp64.a
-r-xr-xr-x 1 root root 497597 Aug 9 22:25 libmkl_blacs_intelmpi_ilp64.so
-r--r--r-- 1 root root 676206 Aug 9 22:21 libmkl_blacs_intelmpi_lp64.a
-r-xr-xr-x 1 root root 267010 Aug 9 22:21 libmkl_blacs_intelmpi_lp64.so
-r--r--r-- 1 root root 674926 Aug 9 22:22 libmkl_blacs_lp64.a
-r--r--r-- 1 root root 1218290 Aug
9 22:28 libmkl_blacs_openmpi_ilp64.a
-r--r--r-- 1 root root 703042 Aug 9 22:23 libmkl_blacs_openmpi_lp64.a
-r--r--r-- 1 root root 1191152 Aug 9 22:29 libmkl_blacs_sgimpt_ilp64.a
-r--r--r-- 1 root root 675854 Aug 9 22:23 libmkl_blacs_sgimpt_lp64.a
-r--r--r-- 1 root root 425802 Aug 9 20:44 libmkl_blas95_ilp64.a
-r--r--r-- 1 root root 421410 Aug 9 20:44 libmkl_blas95_lp64.a
-r--r--r-- 1 root root 144354 Aug 9 22:29 libmkl_cdft_core.a
-r-xr-xr-x 1 root root 115588 Aug 9 22:29 libmkl_cdft_core.so
-r--r--r-- 1 root root 231886824 Aug 9 22:07 libmkl_core.a
-r-xr-xr-x 1 root root 16730033 Aug 9 22:18 libmkl_core.so
-r-xr-xr-x 1 root root 21474555 Aug 9 22:18 libmkl_def.so
-r--r--r-- 1 root root 14974574 Aug 9 22:06
libmkl_gf_ilp64.a
-r-xr-xr-x 1 root root 7008828 Aug 9 22:48 libmkl_gf_ilp64.so
-r--r--r-- 1 root root 15140998 Aug 9 22:06 libmkl_gf_lp64.a
-r-xr-xr-x 1 root root 7055304 Aug 9 22:48 libmkl_gf_lp64.so
-r--r--r-- 1 root root 16435120 Aug 9 22:07 libmkl_gnu_thread.a
-r-xr-xr-x 1 root root 9816940 Aug 9 22:49 libmkl_gnu_thread.so
-r--r--r-- 1 root root 14968130 Aug 9 22:06 libmkl_intel_ilp64.a
-r-xr-xr-x 1 root root 7008368 Aug 9 22:48 libmkl_intel_ilp64.so
-r--r--r-- 1 root root 15134406 Aug 9 22:06 libmkl_intel_lp64.a
-r-xr-xr-x 1 root root 7053588 Aug 9 22:48 libmkl_intel_lp64.so
-r--r--r-- 1 root root 2472940 Aug 9 22:07 libmkl_intel_sp2dp.a
-r-xr-xr-x 1 root root 1191479 Aug 9 22:20 libmkl_intel_sp2dp.so
-r--r--r-- 1 root root 27642508
Aug 9 22:07 libmkl_intel_thread.a
-r-xr-xr-x 1 root root 17516608 Aug 9 22:49 libmkl_intel_thread.so
-r--r--r-- 1 root root 5350948 Aug 9 20:44 libmkl_lapack95_ilp64.a
-r--r--r-- 1 root root 5413476 Aug 9 20:44 libmkl_lapack95_lp64.a
-r-xr-xr-x 1 root root 29543829 Aug 9 22:19 libmkl_mc3.so
-r-xr-xr-x 1 root root 25428037 Aug 9 22:19 libmkl_mc.so
-r-xr-xr-x 1 root root 22888659 Aug 9 22:18 libmkl_p4n.so
-r--r--r-- 1 root root 19232716 Aug 9 22:07 libmkl_pgi_thread.a
-r-xr-xr-x 1 root root 12243062 Aug 9 22:49 libmkl_pgi_thread.so
-r-xr-xr-x 1 root root 4984870 Aug 9 22:49 libmkl_rt.so
-r--r--r-- 1 root root 10367758 Aug 9 22:49 libmkl_scalapack_ilp64.a
-r-xr-xr-x 1 root root 6574928 Aug 9 22:50 libmkl_scalapack_ilp64.so
-r--r--r-- 1 root root 10292432
Aug 9 22:49 libmkl_scalapack_lp64.a
-r-xr-xr-x 1 root root 6452627 Aug 9 22:50 libmkl_scalapack_lp64.so
-r--r--r-- 1 root root 9958444 Aug 9 22:07 libmkl_sequential.a
-r-xr-xr-x 1 root root 5926347 Aug 9 22:48 libmkl_sequential.so
-r--r--r-- 1 root root 1048 Aug 9 16:50 libmkl_solver_ilp64.a
-r--r--r-- 1 root root 1048 Aug 9 16:50 libmkl_solver_ilp64_sequential.a
-r--r--r-- 1 root root 1048 Aug 9 16:50 libmkl_solver_lp64.a
-r--r--r-- 1 root root 1048 Aug 9 16:50 libmkl_solver_lp64_sequential.a
-r-xr-xr-x 1 root root 6711968 Aug 9 22:48 libmkl_vml_avx.so
-r-xr-xr-x 1 root root 2795928 Aug 9 22:47 libmkl_vml_def.so
-r-xr-xr-x 1 root root 5476786 Aug 9 22:48
libmkl_vml_mc2.so
-r-xr-xr-x 1 root root 5778052 Aug 9 22:48 libmkl_vml_mc3.so
-r-xr-xr-x 1 root root 5382511 Aug 9 22:48 libmkl_vml_mc.so
-r-xr-xr-x 1 root root 4235841 Aug 9 22:48 libmkl_vml_p4n.so
drwxr-xr-x 3 root root 4096 Aug 18 11:43 locale
Y
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Message: 1
Date: Tue, 13 Sep 2011 09:58:27 -0400
From: Olivier Delalleau <shish at keba.be>
Subject: Re: [Numpy-discussion] Numpy -
MKL - build error
To: Discussion of Numerical Python <numpy-discussion at scipy.org>
Message-ID:
<CAFXk4bpDN7qcwmZe2G565gsuOntau7LMH4fGSTH_zY_R+NLbMg at mail.gmail.com>
Content-Type: text/plain; charset="iso-8859-1"
Sorry if it sounds like a stupid question, but are the files listed in the
error message present in that directory?
If yes, maybe try running the command with sudo, just in case it would be
some weird permission issue.
-=- Olivier
2011/9/13 Igor Ying <igor.ying at yahoo.com>
> Hi,
>
> I am very new to Numpy and trying to build Numpy 1.6.1 with Intel MKL
> 10.3.6 and getting the following
errors.
>
> $python setup.py config --compiler=intel build_clib --compiler=intel
> build_ext --compiler=intel install
>
> Running from numpy source directory.F2PY Version 2
> blas_opt_info:
> blas_mkl_info:
> libraries mkl_def,mkl_intel_lp64,mkl_intel_thread,mkl_core,iomp5md not
> found in /opt/intel/composer_xe_2011_sp1/mkl/lib/intel64
> NOT AVAILABLE
>
> I have modified the site.cfg as below.
>
> [mkl]
> library_dirs = /opt/intel/composer_xe_2011_sp1/mkl/lib/intel64
> include_dirs = /opt/intel/composer_xe_2011_sp1/mkl/include
> mkl_libs = mkl_def,mkl_intel_lp64,mkl_intel_thread,mkl_core,iomp5md
> lapack_libs = mkl_lapack_lp64
>
>
> Environment variables are also set to point to mkl libraries.
>
> source /opt/intel/composer_xe_2011_sp1/bin/compilervars.sh intel64 lp64
>
> export
OMP_NUM_THREADS=4
> LD_LIBRARY_PATH="/opt/intel/composer_xe_2011_sp1/mkl/lib/intel64:${LD_LIBRARY_PATH}";
>
> export LD_LIBRARY_PATH
> export
> LD_RUN_PATH=/opt/lib:/opt1/composer_xe_2011_sp1/lib/intel64:/opt/composer_xe_2011_sp1/mkl/lib/intel64
>
> Can anyone help me?
>
>
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>
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