[Numpy-discussion] scipy build errors
raghu330
raghu330 at gmail.com
Thu Feb 28 07:58:42 EST 2013
Dear All,
I am trying to install iris, which needs scipy0.10 or above. My machine is
RHEL6 with gfortran and g95 installed. I was able to install numpy without
any trouble, but have issues with scipy. I have installed ATLAS, BLAS and
LAPACK, but I still get this error. Kindly let me know how to go ahead..
Thanks in advance & Regards
Raghu
-----------------
/opt/python2.7.3/bin/python setup.py build --fcompiler=gfortran
Running from scipy source directory.
blas_opt_info:
blas_mkl_info:
libraries mkl,vml,guide not found in /opt/python2.7.3/lib
libraries mkl,vml,guide not found in /usr/local/lib64
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /opt/lib
libraries mkl,vml,guide not found in /usr/lib64
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /opt/python2.7.3/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib64
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries ptf77blas,ptcblas,atlas not found in /opt/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64/atlas
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64/sse2
libraries ptf77blas,ptcblas,atlas not found in /usr/lib64
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
NOT AVAILABLE
atlas_blas_info:
libraries f77blas,cblas,atlas not found in /opt/python2.7.3/lib
libraries f77blas,cblas,atlas not found in /usr/local/lib64
libraries f77blas,cblas,atlas not found in /usr/local/lib
libraries f77blas,cblas,atlas not found in /opt/lib
libraries f77blas,cblas,atlas not found in /usr/lib64/atlas
libraries f77blas,cblas,atlas not found in /usr/lib64/sse2
libraries f77blas,cblas,atlas not found in /usr/lib64
libraries f77blas,cblas,atlas not found in /usr/lib
NOT AVAILABLE
/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/system_info.py:1425
: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
warnings.warn(AtlasNotFoundError.__doc__)
blas_info:
libraries blas not found in /opt/python2.7.3/lib
libraries blas not found in /usr/local/lib64
libraries blas not found in /usr/local/lib
libraries blas not found in /opt/lib
libraries blas not found in /usr/lib64
libraries blas not found in /usr/lib
NOT AVAILABLE
/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/system_info.py:1434
: UserWarning:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
warnings.warn(BlasNotFoundError.__doc__)
blas_src_info:
NOT AVAILABLE
/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/system_info.py:1437
: UserWarning:
Blas (http://www.netlib.org/blas/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [blas_src]) or by setting
the BLAS_SRC environment variable.
warnings.warn(BlasSrcNotFoundError.__doc__)
Traceback (most recent call last):
File "setup.py", line 208, in <module>
setup_package()
File "setup.py", line 199, in setup_package
configuration=configuration )
File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/core.py", l
ine 152, in setup
config = configuration()
File "setup.py", line 136, in configuration
config.add_subpackage('scipy')
File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/misc_util.p
y", line 1002, in add_subpackage
caller_level = 2)
File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/misc_util.p
y", line 971, in get_subpackage
caller_level = caller_level + 1)
File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/misc_util.p
y", line 908, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/setup.py", line 8, in configuration
config.add_subpackage('integrate')
File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/misc_util.p
y", line 1002, in add_subpackage
caller_level = 2)
File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/misc_util.p
y", line 971, in get_subpackage
caller_level = caller_level + 1)
File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/misc_util.p
y", line 908, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/integrate/setup.py", line 10, in configuration
blas_opt = get_info('blas_opt',notfound_action=2)
File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/system_info
.py", line 321, in get_info
return cl().get_info(notfound_action)
File
"/opt/python2.7.3/lib/python2.7/site-packages/numpy/distutils/system_info
.py", line 472, in get_info
raise self.notfounderror(self.notfounderror.__doc__)
numpy.distutils.system_info.BlasNotFoundError:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
------------------------------------ EOM
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