[Numpy-discussion] BLAS / LAPACK / MKL cannot be found?

[Bram Willemsen]

Hi everyone,

I am trying to install a package called PySparse. I have modified the paths
in the template site.cfg file. It appears that during the built process it
compiles numpy as well, because the error messages I get are all over the
numpy mailing list (I did not find one addressing my problem exactly).

My MKL libs are installed at
"/wgdisk/omega2dev2/env/EL5/intel/composer_xe_2013.0.079/mkl/lib/intel64" .
There are BLAS / LAPACK libraries here (I provided the library mkl_rt.so
to  SuiteSparse for instance, and it resolved all LAPACK and BLAS
dependencies that way). But for some reason
"/wgdisk/omega2dev2/env/EL5/intel/composer_xe_2013.0.079/mkl/lib/intel64"
does not work in the built process below, in what I think is a numpy
installer. The output shows that the directory is searched, but that the
result is "NOT AVAILABLE".

Could someone give me a pointer for why my the MKL/BLAS/LAPACK dependencies
cannot be resolved? It would be very appreciated

sincerely,
Bram

---------------------------------------------------------------------------
PART OF THE OUTPUT OF PySparse SETUP.PY
---------------------------------------------------------------------------

blas_opt_info:
blas_mkl_info:
  libraries mkl,vml,guide not found in ['/usr/local/lib',
'/wgdisk/hy3300/re15/lwillemsen/local_install/lib',
'/wgdisk/omega2dev2/env/EL5/intel/composer_xe_2013.0.079/mkl/lib/intel64']
  NOT AVAILABLE

openblas_info:
  libraries  not found in ['/usr/local/lib',
'/wgdisk/hy3300/re15/lwillemsen/local_install/lib',
'/wgdisk/omega2dev2/env/EL5/intel/composer_xe_2013.0.079/mkl/lib/intel64']
  NOT AVAILABLE

atlas_blas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in ['/usr/local/lib',
'/wgdisk/hy3300/re15/lwillemsen/local_install/lib',
'/wgdisk/omega2dev2/env/EL5/intel/composer_xe_2013.0.079/mkl/lib/intel64']
  NOT AVAILABLE

atlas_blas_info:
  libraries f77blas,cblas,atlas not found in ['/usr/local/lib',
'/wgdisk/hy3300/re15/lwillemsen/local_install/lib',
'/wgdisk/omega2dev2/env/EL5/intel/composer_xe_2013.0.079/mkl/lib/intel64']
  NOT AVAILABLE

blas_info:
  libraries blas not found in ['/usr/local/lib',
'/wgdisk/hy3300/re15/lwillemsen/local_install/lib',
'/wgdisk/omega2dev2/env/EL5/intel/composer_xe_2013.0.079/mkl/lib/intel64']
  NOT AVAILABLE

blas_src_info:
  NOT AVAILABLE

  NOT AVAILABLE

No blas info found
Sparse:: Using BLAS info:
{}
Using dflt_lib_dirs =
/usr/local/lib:/wgdisk/hy3300/re15/lwillemsen/local_install/lib:/wgdisk/omega2dev2/env/EL5/intel/composer_xe_2013.0.079/mkl/lib/intel64
Using dflt_libs =  []
No blas info found
Eigen:: Using BLAS info:
{}
lapack_opt_info:
lapack_mkl_info:
mkl_info:
  libraries mkl,vml,guide not found in ['/usr/local/lib',
'/wgdisk/hy3300/re15/lwillemsen/local_install/lib',
'/wgdisk/omega2dev2/env/EL5/intel/composer_xe_2013.0.079/mkl/lib/intel64']
  NOT AVAILABLE

  NOT AVAILABLE

atlas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
  libraries lapack_atlas not found in /usr/local/lib
  libraries ptf77blas,ptcblas,atlas not found in
/wgdisk/hy3300/re15/lwillemsen/local_install/lib
  libraries lapack_atlas not found in
/wgdisk/hy3300/re15/lwillemsen/local_install/lib
  libraries ptf77blas,ptcblas,atlas not found in
/wgdisk/omega2dev2/env/EL5/intel/composer_xe_2013.0.079/mkl/lib/intel64
  libraries lapack_atlas not found in
/wgdisk/omega2dev2/env/EL5/intel/composer_xe_2013.0.079/mkl/lib/intel64
numpy.distutils.system_info.atlas_threads_info
  NOT AVAILABLE

atlas_info:
  libraries f77blas,cblas,atlas not found in /usr/local/lib
  libraries lapack_atlas not found in /usr/local/lib
  libraries f77blas,cblas,atlas not found in
/wgdisk/hy3300/re15/lwillemsen/local_install/lib
  libraries lapack_atlas not found in
/wgdisk/hy3300/re15/lwillemsen/local_install/lib
  libraries f77blas,cblas,atlas not found in
/wgdisk/omega2dev2/env/EL5/intel/composer_xe_2013.0.079/mkl/lib/intel64
  libraries lapack_atlas not found in
/wgdisk/omega2dev2/env/EL5/intel/composer_xe_2013.0.079/mkl/lib/intel64
numpy.distutils.system_info.atlas_info
  NOT AVAILABLE

lapack_info:
  libraries lapack not found in ['/usr/local/lib',
'/wgdisk/hy3300/re15/lwillemsen/local_install/lib',
'/wgdisk/omega2dev2/env/EL5/intel/composer_xe_2013.0.079/mkl/lib/intel64']
  NOT AVAILABLE

lapack_src_info:
  NOT AVAILABLE

  NOT AVAILABLE

No lapack info found
Eigen:: Using LAPACK info:
{}
non-existing path in 'pysparse/eigen':
'/usr/local/lib:/wgdisk/hy3300/re15/lwillemsen/local_install/lib:/wgdisk/omega2dev2/env/EL5/intel/composer_xe_2013.0.079/mkl/lib/intel64'
No blas info found
Direct:: Using BLAS info:
{}
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.python.org/pipermail/numpy-discussion/attachments/20140718/187e98b5/attachment.html>