[Numpy-discussion] Numpy Installation Problem Asking

[Ralf Gommers]

On Thu, Mar 20, 2014 at 4:04 PM, Chia Jing Yi <cjyxiaodi1 at gmail.com> wrote:

> Hi,
>
> I plan to plot a sashimi plot to view the alternative splicing event of my
> interested "gene" by using MISO.
>
> After follow the following link, http://genes.mit.edu/burgelab/miso/docs/and read through the forum.
> Unfortunately, I still face some problems to run the complete set of MISO
> successful.
>
> I can run some of the python script but I still fail to run some of it :(
> It shown the following error message when I try some of the MISO python
> script (compare_miso.py, run_miso.py, sashimi_plot.py, etc).
> *.*
> *.*
> *.*
> *ImportError: No module named _ufuncs*
>
> I can successful run some of the important MISO script (index_gff.py,
> sam_to_bam.py).
>
> I'm downloading everything by using Python-2.7.
> I suspect it might due to numpy or scipy installation problem.
> Unfortunately, I still fail to figure it out :(
> I have try to use Python-3.3.
> But it will show the following error message when I try to run all the
> python script under MISO :
> *.*
> *.*
> *SyntaxError: invalid syntax*
>
> I have browse through forum and seqanswer etc.
> Unfortunately I still fail to figure out why it happen :(
> I have to manual download all the package and install it separately as I
> don't have the purposely through access network through server.
> It is due to the network security of server at University.
>
> Thanks and looking forward to hear from any of you.
>

Hi, you have to give a full traceback otherwise we can't help you. And
please don't double post, you sent the same message to scipy-user.

Ralf
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