[Numpy-discussion] Numpy Installation Problem Asking

Chia Jing Yi cjyxiaodi1 at gmail.com
Thu Mar 20 21:20:17 EDT 2014


Hi,

Thanks a lot for your email.
I will upload the full traceback soon.

Sorry for posting the same thread at scipy-user too.
I don't aware about that numpy and scipy user group is linked.

I apologize for my mistakes.
I will be more careful in future.

best regards
Edge




On Fri, Mar 21, 2014 at 3:37 AM, Ralf Gommers <ralf.gommers at gmail.com>wrote:

>
>
>
> On Thu, Mar 20, 2014 at 4:04 PM, Chia Jing Yi <cjyxiaodi1 at gmail.com>wrote:
>
>> Hi,
>>
>> I plan to plot a sashimi plot to view the alternative splicing event of
>> my interested "gene" by using MISO.
>>
>> After follow the following link, http://genes.mit.edu/burgelab/miso/docs/and read through the forum.
>> Unfortunately, I still face some problems to run the complete set of MISO
>> successful.
>>
>> I can run some of the python script but I still fail to run some of it :(
>> It shown the following error message when I try some of the MISO python
>> script (compare_miso.py, run_miso.py, sashimi_plot.py, etc).
>> *.*
>> *.*
>> *.*
>> *ImportError: No module named _ufuncs*
>>
>> I can successful run some of the important MISO script (index_gff.py,
>> sam_to_bam.py).
>>
>> I'm downloading everything by using Python-2.7.
>> I suspect it might due to numpy or scipy installation problem.
>> Unfortunately, I still fail to figure it out :(
>> I have try to use Python-3.3.
>> But it will show the following error message when I try to run all the
>> python script under MISO :
>> *.*
>> *.*
>> *SyntaxError: invalid syntax*
>>
>> I have browse through forum and seqanswer etc.
>> Unfortunately I still fail to figure out why it happen :(
>> I have to manual download all the package and install it separately as I
>> don't have the purposely through access network through server.
>> It is due to the network security of server at University.
>>
>> Thanks and looking forward to hear from any of you.
>>
>
> Hi, you have to give a full traceback otherwise we can't help you. And
> please don't double post, you sent the same message to scipy-user.
>
> Ralf
>
>
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>
>
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