[Numpy-discussion] Instaling numpy without root access

[Lahiru Samarakoon]

I switched to numpy-1.8.2. . Now getting following error. I am using
LAPACK that comes with atlast installation. Can this be a problem?

Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File
"/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/__init__.py",
line 170, in <module>
    from . import add_newdocs
  File
"/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/add_newdocs.py",
line 13, in <module>
    from numpy.lib import add_newdoc
  File
"/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/lib/__init__.py",
line 18, in <module>
    from .polynomial import *
  File
"/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/lib/polynomial.py",
line 19, in <module>
    from numpy.linalg import eigvals, lstsq, inv
  File
"/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/linalg/__init__.py",
line 51, in <module>
    from .linalg import *
  File
"/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/linalg/linalg.py",
line 29, in <module>
    from numpy.linalg import lapack_lite, _umath_linalg
ImportError:
/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/linalg/lapack_lite.so:
undefined symbol: zgesdd_

On Sat, Oct 11, 2014 at 1:30 AM, Julian Taylor <
jtaylor.debian at googlemail.com> wrote:

> On 10.10.2014 19:26, Lahiru Samarakoon wrote:
> > Red Hat Enterprise Linux release 5.8
> > gcc (GCC) 4.1.2
> >
> > I am also trying to install numpy 1.9.
>
> that is the broken platform, please try the master branch or the
> maintenance/1.9.x branch, those should work now.
>
> Are there volunteers to report this to redhat?
>
> >
> > On Sat, Oct 11, 2014 at 12:59 AM, Julian Taylor
> > <jtaylor.debian at googlemail.com <mailto:jtaylor.debian at googlemail.com>>
> > wrote:
> >
> >     On 10.10.2014 18:51, Lahiru Samarakoon wrote:
> >     > Dear all,
> >     >
> >     > I am trying to install numpy without root access. So I am building
> from
> >     > the source.  I have installed atlas which also has lapack with
> it.  I
> >     > changed the site.cfg file as given below
> >     >
> >     > [DEFAULT]
> >     > library_dirs = /home/svu/a0095654/ATLAS/build/lib
> >     > include_dirs = /home/svu/a0095654/ATLAS/build/include
> >     >
> >     >
> >     > However, I am getting a segmentation fault when importing numpy.
> >     >
> >     > Please advise. I also put the build log file at the end of the
> email if
> >     > necessary.
> >
> >
> >     Which platform are you working on? Which compiler version?
> >     We just solved a segfault on import on red hat 5 gcc 4.1.2. Very
> likely
> >     caused by a compiler bug. See
> https://github.com/numpy/numpy/issues/5163
> >
> >     The build log is complaining about your atlas being to small,
> possibly
> >     the installation is broken?
> >
> >
>
>
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