[Numpy-discussion] Problem with compiling openacc with f2py

Vikram Singh vikramsingh001 at gmail.com
Thu Oct 27 06:30:59 EDT 2016


I am a newbie to f2py so I have been creating simple test cases.
Eventually I want to be able to use openacc subroutine from python. So
here's the test case

    module test

     use iso_c_binding, only: sp => C_FLOAT, dp => C_DOUBLE, i8 => C_INT
     use omp_lib
     use openacc

     implicit none

     contains

       subroutine add_acc (a, b, n, c)
          integer(kind=i8), intent(in)  :: n
          real(kind=dp), intent(in)  :: a(n)
          real(kind=dp), intent(in)  :: b(n)
          real(kind=dp), intent(out) :: c(n)

          integer(kind=i8)  :: i

          !$acc kernels
          do i = 1, n
              c(i) = a(i) + b(i)
          end do
          !$acc end kernels

      end subroutine add_acc

      subroutine add_omp (a, b, n, c)
          integer(kind=i8), intent(in)  :: n
          real(kind=dp), intent(in)  :: a(n)
          real(kind=dp), intent(in)  :: b(n)
          real(kind=dp), intent(out) :: c(n)

          integer(kind=i8)  :: i, j

          !$omp parallel do
          do i = 1, n
              c(i) = a(i) + b(i)
          end do
          !$omp end parallel do

      end subroutine add_omp

      subroutine nt (c)
          integer(kind=i8), intent(out) :: c

          c = omp_get_max_threads()

      end subroutine nt

      subroutine mult (a, b, c)
          real(kind=dp), intent(in)  :: a
          real(kind=dp), intent(in)  :: b
          real(kind=dp), intent(out) :: c

          c = a * b

      end subroutine mult

    end module test

I compile using

f2py -c -m --f90flags='-fopenacc -foffload=nvptx-none -foffload=-O3
-O3 -fPIC' hello hello.f90 -L/usr/local/cuda/lib64 -lcublas -lcudart
-lgomp

Now, until I add the acc directives everything works fine. But as soon
as I add the acc directives I get this error.

gfortran:f90: /tmp/tmpld6ssow3/src.linux-x86_64-3.5/hello-f2pywrappers2.f90
/home//Experiments/Nvidia/OpenACC/OLCFHack15/gcc6/install/bin/gfortran
-Wall -g -Wall -g -shared
/tmp/tmpld6ssow3/tmp/tmpld6ssow3/src.linux-x86_64-3.5/hellomodule.o
/tmp/tmpld6ssow3/tmp/tmpld6ssow3/src.linux-x86_64-3.5/fortranobject.o
/tmp/tmpld6ssow3/hello.o
/tmp/tmpld6ssow3/tmp/tmpld6ssow3/src.linux-x86_64-3.5/hello-f2pywrappers2.o
-L/usr/local/cuda/lib64 -L/home//usr/local/miniconda/lib -lcublas
-lcudart -lgomp -lpython3.5m -lgfortran -o
./hello.cpython-35m-x86_64-linux-gnu.so
/usr/bin/ld: /tmp/cc2yQ89d.target.o: relocation R_X86_64_32 against
`.rodata' can not be used when making a shared object; recompile with
-fPIC
/tmp/cc2yQ89d.target.o: error adding symbols: Bad value
collect2: error: ld returned 1 exit status
/usr/bin/ld: /tmp/cc2yQ89d.target.o: relocation R_X86_64_32 against
`.rodata' can not be used when making a shared object; recompile with
-fPIC
/tmp/cc2yQ89d.target.o: error adding symbols: Bad value
collect2: error: ld returned 1 exit status
error: Command "/home//Experiments/Nvidia/OpenACC/OLCFHack15/gcc6/install/bin/gfortran
-Wall -g -Wall -g -shared
/tmp/tmpld6ssow3/tmp/tmpld6ssow3/src.linux-x86_64-3.5/hellomodule.o
/tmp/tmpld6ssow3/tmp/tmpld6ssow3/src.linux-x86_64-3.5/fortranobject.o
/tmp/tmpld6ssow3/hello.o
/tmp/tmpld6ssow3/tmp/tmpld6ssow3/src.linux-x86_64-3.5/hello-f2pywrappers2.o
-L/usr/local/cuda/lib64 -L/home//usr/local/miniconda/lib -lcublas
-lcudart -lgomp -lpython3.5m -lgfortran -o
./hello.cpython-35m-x86_64-linux-gnu.so" failed with exit status 1

I don't get why just putting acc directives should create errors, when
omp does not.

Vikram



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