From noreply at github.com  Thu Aug  2 23:52:40 2012
From: noreply at github.com (GitHub)
Date: Thu, 02 Aug 2012 20:52:40 -0700
Subject: [Numpy-svn] [numpy/numpy] 339c35: Copy bytes object when unpickling
	an array
Message-ID: <501b4b08cc372_62c01480ae8600d7@sh3.rs.github.com.mail>

  Branch: refs/heads/master
  Home:   https://github.com/numpy/numpy
  Commit: 339c35f30a0a3b52b13980dabb8eeda9602b686f
      https://github.com/numpy/numpy/commit/339c35f30a0a3b52b13980dabb8eeda9602b686f
  Author: Ronan Lamy <Ronan.Lamy at normalesup.org>
  Date:   2012-07-30 (Mon, 30 Jul 2012)

  Changed paths:
    M numpy/core/src/multiarray/methods.c
    M numpy/core/tests/test_regression.py

  Log Message:
  -----------
  Copy bytes object when unpickling an array


  Commit: d1839283a2b0b393096cf6bda9b386ea5809d4b0
      https://github.com/numpy/numpy/commit/d1839283a2b0b393096cf6bda9b386ea5809d4b0
  Author: Ronan Lamy <Ronan.Lamy at normalesup.org>
  Date:   2012-08-02 (Thu, 02 Aug 2012)

  Changed paths:
    M numpy/core/src/multiarray/methods.c

  Log Message:
  -----------
  Re-enable unpickling optimization for large py3k bytes objects.

Mutating a bytes object is theoretically unsafe, but doesn't cause any
problem in any existing version of CPython.


  Commit: fd15162fbff5dd68c548284947d39bb2a2481183
      https://github.com/numpy/numpy/commit/fd15162fbff5dd68c548284947d39bb2a2481183
  Author: Travis E. Oliphant <teoliphant at gmail.com>
  Date:   2012-08-02 (Thu, 02 Aug 2012)

  Changed paths:
    M numpy/core/src/multiarray/methods.c
    M numpy/core/tests/test_regression.py

  Log Message:
  -----------
  Merge pull request #371 from rlamy/bytes-pickle

Copy bytes object for small arrays when unpickling an array


Compare: https://github.com/numpy/numpy/compare/26fed25e7f04...fd15162fbff5

From noreply at github.com  Sat Aug  4 01:46:23 2012
From: noreply at github.com (GitHub)
Date: Fri, 03 Aug 2012 22:46:23 -0700
Subject: [Numpy-svn] [numpy/numpy] a9d58a: FIX: Fixes the PyUnicodeObject
 problem in py-3.3
Message-ID: <501cb72fa880_66f11300aec241f1@sh3.rs.github.com.mail>

  Branch: refs/heads/master
  Home:   https://github.com/numpy/numpy
  Commit: a9d58ab42da8d2ed9071044848a54c5e066b557a
      https://github.com/numpy/numpy/commit/a9d58ab42da8d2ed9071044848a54c5e066b557a
  Author: Ondrej Certik <ondrej.certik at gmail.com>
  Date:   2012-08-03 (Fri, 03 Aug 2012)

  Changed paths:
    M numpy/core/src/multiarray/scalarapi.c
    M numpy/core/src/multiarray/scalartypes.c.src

  Log Message:
  -----------
  FIX: Fixes the PyUnicodeObject problem in py-3.3

Previously NumPy did not compile in Python 3.3 due to the changes in PEP 393.
This patch simply calls PyUnicode_FromKindAndData() from the new Python 3.3 API
and possibly swaps the data before calling it if needed. The data in NumPy is always UCS4 and the PyUnicode_FromKindAndData() internally converts it to UCS1, UCS2 or UCS4 depending on the maximum code point.

The following tests now fail, because they produce invalid unicode in the
process (will be fixed in the next patch):

======================================================================
ERROR: Check byteorder of 0-dimensional objects
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/ondrej/py33/lib/python3.3/site-packages/numpy/core/tests/test_unicode.py", line 277, in test_values0D
    self.assertTrue(ua[()] != ua2[()])
SystemError: invalid maximum character passed to PyUnicode_New

======================================================================
ERROR: Check byteorder of multi-dimensional objects
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/ondrej/py33/lib/python3.3/site-packages/numpy/core/tests/test_unicode.py", line 297, in test_valuesMD
    self.assertTrue(ua[0,0,0] != ua2[0,0,0])
SystemError: invalid maximum character passed to PyUnicode_New

======================================================================
ERROR: Check byteorder of single-dimensional objects
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/ondrej/py33/lib/python3.3/site-packages/numpy/core/tests/test_unicode.py", line 286, in test_valuesSD
    self.assertTrue(ua[0] != ua2[0])
SystemError: invalid maximum character passed to PyUnicode_New

======================================================================
ERROR: Check byteorder of 0-dimensional objects
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/ondrej/py33/lib/python3.3/site-packages/numpy/core/tests/test_unicode.py", line 277, in test_values0D
    self.assertTrue(ua[()] != ua2[()])
SystemError: invalid maximum character passed to PyUnicode_New

======================================================================
ERROR: Check byteorder of multi-dimensional objects
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/ondrej/py33/lib/python3.3/site-packages/numpy/core/tests/test_unicode.py", line 297, in test_valuesMD
    self.assertTrue(ua[0,0,0] != ua2[0,0,0])
SystemError: invalid maximum character passed to PyUnicode_New

======================================================================
ERROR: Check byteorder of single-dimensional objects
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/ondrej/py33/lib/python3.3/site-packages/numpy/core/tests/test_unicode.py", line 286, in test_valuesSD
    self.assertTrue(ua[0] != ua2[0])
SystemError: invalid maximum character passed to PyUnicode_New


  Commit: 4234b6b13e3ee9da6fc1c24e9e8c442d77587837
      https://github.com/numpy/numpy/commit/4234b6b13e3ee9da6fc1c24e9e8c442d77587837
  Author: Ondrej Certik <ondrej.certik at gmail.com>
  Date:   2012-08-03 (Fri, 03 Aug 2012)

  Changed paths:
    M numpy/core/tests/test_unicode.py

  Log Message:
  -----------
  FIX: Make sure the tests produce valid unicode

The tests are testing byte order for unicode, so we can only use such unicode
data, so that both versions (swapped and unswapped) are valid unicode.


  Commit: 09d2c51fa1d09b17060a8545b925f4dded9dedb1
      https://github.com/numpy/numpy/commit/09d2c51fa1d09b17060a8545b925f4dded9dedb1
  Author: Ondrej Certik <ondrej.certik at gmail.com>
  Date:   2012-08-03 (Fri, 03 Aug 2012)

  Changed paths:
    M numpy/core/src/multiarray/scalarapi.c

  Log Message:
  -----------
  Follow the C guidelines


  Commit: f2ac38f09ff258339ef44572a3abba02019e1f55
      https://github.com/numpy/numpy/commit/f2ac38f09ff258339ef44572a3abba02019e1f55
  Author: Ondrej Certik <ondrej.certik at gmail.com>
  Date:   2012-08-03 (Fri, 03 Aug 2012)

  Changed paths:
    M numpy/core/src/multiarray/scalarapi.c

  Log Message:
  -----------
  Use PyUnicode_DecodeUTF32()

This function handles the swapping automatically and it returns a unicode
object in one of: UCS1, UCS2 or UCS4 internal Python format.


  Commit: 4676f33f9c77b04e9c599e642de7ab465f48ea8f
      https://github.com/numpy/numpy/commit/4676f33f9c77b04e9c599e642de7ab465f48ea8f
  Author: Travis E. Oliphant <teoliphant at gmail.com>
  Date:   2012-08-03 (Fri, 03 Aug 2012)

  Changed paths:
    M numpy/core/src/multiarray/scalarapi.c
    M numpy/core/src/multiarray/scalartypes.c.src
    M numpy/core/tests/test_unicode.py

  Log Message:
  -----------
  Merge pull request #372 from certik/py3.3-cleaner

A fix for the ??PyUnicodeObject Python 3.3


Compare: https://github.com/numpy/numpy/compare/fd15162fbff5...4676f33f9c77

From noreply at github.com  Sat Aug  4 08:35:50 2012
From: noreply at github.com (GitHub)
Date: Sat, 04 Aug 2012 05:35:50 -0700
Subject: [Numpy-svn] [numpy/numpy] 8a4e0f: Fix memory leak in concatenate.
Message-ID: <501d172676519_43261c32ae8294f0@sh2.rs.github.com.mail>

  Branch: refs/heads/master
  Home:   https://github.com/numpy/numpy
  Commit: 8a4e0f57844452ceca43388cb87f5a53c3471c80
      https://github.com/numpy/numpy/commit/8a4e0f57844452ceca43388cb87f5a53c3471c80
  Author: Chris <ccianci at appliedminds.com>
  Date:   2012-08-03 (Fri, 03 Aug 2012)

  Changed paths:
    M numpy/core/src/multiarray/multiarraymodule.c

  Log Message:
  -----------
  Fix memory leak in concatenate.

Temporary array was not being freed after use.


  Commit: fcdbcac4fa300a81e687fe93a956b54e7a6f7db5
      https://github.com/numpy/numpy/commit/fcdbcac4fa300a81e687fe93a956b54e7a6f7db5
  Author: Charles Harris <charlesr.harris at gmail.com>
  Date:   2012-08-04 (Sat, 04 Aug 2012)

  Changed paths:
    M numpy/core/src/multiarray/multiarraymodule.c

  Log Message:
  -----------
  Merge pull request #373 from cianci/concatenate_leak_fix

Fix memory leak in concatenate.


Compare: https://github.com/numpy/numpy/compare/4676f33f9c77...fcdbcac4fa30

From noreply at github.com  Fri Aug 10 19:23:54 2012
From: noreply at github.com (GitHub)
Date: Fri, 10 Aug 2012 16:23:54 -0700
Subject: [Numpy-svn] [numpy/numpy] 63cd8f: BUG: fix bento build.
Message-ID: <5025980ac17b4_2101a21aec90139@sh3.rs.github.com.mail>

  Branch: refs/heads/master
  Home:   https://github.com/numpy/numpy
  Commit: 63cd8f3cc751771fd27636009b8c0341a2beff45
      https://github.com/numpy/numpy/commit/63cd8f3cc751771fd27636009b8c0341a2beff45
  Author: David Cournapeau <cournape at gmail.com>
  Date:   2012-08-10 (Fri, 10 Aug 2012)

  Changed paths:
    M numpy/core/bscript

  Log Message:
  -----------
  BUG: fix bento build.




From noreply at github.com  Mon Aug 13 02:08:58 2012
From: noreply at github.com (GitHub)
Date: Sun, 12 Aug 2012 23:08:58 -0700
Subject: [Numpy-svn] [numpy/numpy] 407702: Fix the path to the release notes
Message-ID: <502899fa6322_7c8c14c1ae8367c1@sh3.rs.github.com.mail>

  Branch: refs/heads/maintenance/1.7.x
  Home:   https://github.com/numpy/numpy
  Commit: 40770210f2e9fef0f453b5081ddd5a7f3bb9f652
      https://github.com/numpy/numpy/commit/40770210f2e9fef0f453b5081ddd5a7f3bb9f652
  Author: Ondrej Certik <ondrej.certik at gmail.com>
  Date:   2012-08-12 (Sun, 12 Aug 2012)

  Changed paths:
    M pavement.py

  Log Message:
  -----------
  Fix the path to the release notes

This is needed in order to be able to do:

paver write_release_and_log


  Commit: e022a61045fa861dc0bf8512167a4cf3a5943890
      https://github.com/numpy/numpy/commit/e022a61045fa861dc0bf8512167a4cf3a5943890
  Author: Ralf Gommers <ralf.gommers at googlemail.com>
  Date:   2012-08-12 (Sun, 12 Aug 2012)

  Changed paths:
    M pavement.py

  Log Message:
  -----------
  Merge pull request #384 from certik/paver_fix

Fix the path to the release notes


Compare: https://github.com/numpy/numpy/compare/f93774d98114...e022a61045fa

From noreply at github.com  Tue Aug 21 02:19:40 2012
From: noreply at github.com (GitHub)
Date: Mon, 20 Aug 2012 23:19:40 -0700
Subject: [Numpy-svn] [numpy/numpy] 50366a: Release 1.7.0b1
Message-ID: <5033287c79405_47e716a7aec110419@sh3.rs.github.com.mail>

  Branch: refs/heads/maintenance/1.7.x
  Home:   https://github.com/numpy/numpy
  Commit: 50366a2ac0d6158e4434ec5e5b4a9a521610628b
      https://github.com/numpy/numpy/commit/50366a2ac0d6158e4434ec5e5b4a9a521610628b
  Author: Ond?ej ?ert?k <ondrej.certik at gmail.com>
  Date:   2012-08-20 (Mon, 20 Aug 2012)

  Changed paths:
    M pavement.py
    M setup.py

  Log Message:
  -----------
  Release 1.7.0b1




From noreply at github.com  Tue Aug 21 02:20:12 2012
From: noreply at github.com (GitHub)
Date: Mon, 20 Aug 2012 23:20:12 -0700
Subject: [Numpy-svn] [numpy/numpy]
Message-ID: <5033289c73ed9_4ceee02af4521ed@sh3.rs.github.com.mail>

  Branch: refs/tags/v1.7.0b1
  Home:   https://github.com/numpy/numpy


From noreply at github.com  Tue Aug 21 02:21:40 2012
From: noreply at github.com (GitHub)
Date: Mon, 20 Aug 2012 23:21:40 -0700
Subject: [Numpy-svn] [numpy/numpy] 28ffac: REL: set version number to
	1.7.0rc1-dev.
Message-ID: <503328f4cc1d2_54fb13fbaf01048e2@sh2.rs.github.com.mail>

  Branch: refs/heads/maintenance/1.7.x
  Home:   https://github.com/numpy/numpy
  Commit: 28ffac79cb2f71dc19e493b099d11f4aad6a1844
      https://github.com/numpy/numpy/commit/28ffac79cb2f71dc19e493b099d11f4aad6a1844
  Author: Ralf Gommers <ralf.gommers at googlemail.com>
  Date:   2012-08-20 (Mon, 20 Aug 2012)

  Changed paths:
    M setup.py

  Log Message:
  -----------
  REL: set version number to 1.7.0rc1-dev.




From noreply at github.com  Wed Aug 22 04:07:54 2012
From: noreply at github.com (GitHub)
Date: Wed, 22 Aug 2012 01:07:54 -0700
Subject: [Numpy-svn] [numpy/numpy] ea23de: TST: set raise-on-warning
 behavior of NoseTester t...
Message-ID: <5034935abf91a_cb01779aec9407c@sh2.rs.github.com.mail>

  Branch: refs/heads/maintenance/1.7.x
  Home:   https://github.com/numpy/numpy
  Commit: ea23de85d4ead5acc40147b6dd88823ce9a815a3
      https://github.com/numpy/numpy/commit/ea23de85d4ead5acc40147b6dd88823ce9a815a3
  Author: Ralf Gommers <ralf.gommers at googlemail.com>
  Date:   2012-08-22 (Wed, 22 Aug 2012)

  Changed paths:
    M numpy/testing/nosetester.py

  Log Message:
  -----------
  TST: set raise-on-warning behavior of NoseTester to release mode.




From noreply at github.com  Wed Aug 22 09:05:54 2012
From: noreply at github.com (GitHub)
Date: Wed, 22 Aug 2012 06:05:54 -0700
Subject: [Numpy-svn] [numpy/numpy] fb2df7: pavement.py: rename "yop" to
	"atlas"
Message-ID: <5034d9321ea6a_7f621d29af0775da@sh2.rs.github.com.mail>

  Branch: refs/heads/master
  Home:   https://github.com/numpy/numpy
  Commit: fb2df768354e60d5d261a2523b4d2ac626c03d8c
      https://github.com/numpy/numpy/commit/fb2df768354e60d5d261a2523b4d2ac626c03d8c
  Author: Ondrej Certik <ondrej.certik at gmail.com>
  Date:   2012-08-14 (Tue, 14 Aug 2012)

  Changed paths:
    M pavement.py

  Log Message:
  -----------
  pavement.py: rename "yop" to "atlas"


  Commit: 5c944b9c6915264380aa2df3dcfd0629867fbe80
      https://github.com/numpy/numpy/commit/5c944b9c6915264380aa2df3dcfd0629867fbe80
  Author: David Cournapeau <cournape at gmail.com>
  Date:   2012-08-22 (Wed, 22 Aug 2012)

  Changed paths:
    M pavement.py

  Log Message:
  -----------
  Merge pull request #386 from certik/yop_atlas

pavement.py: rename "yop" to "atlas"


Compare: https://github.com/numpy/numpy/compare/63cd8f3cc751...5c944b9c6915

From noreply at github.com  Fri Aug 31 08:52:30 2012
From: noreply at github.com (GitHub)
Date: Fri, 31 Aug 2012 05:52:30 -0700
Subject: [Numpy-svn] [numpy/numpy] 132b37: MAINT: silence DeprecationWarning
 in np.safe_eval(...
Message-ID: <5040b38ed4e46_62301723ae832010@sh2.rs.github.com.mail>

  Branch: refs/heads/master
  Home:   https://github.com/numpy/numpy
  Commit: 132b373a3e50286534df73d07215c11d14d71dda
      https://github.com/numpy/numpy/commit/132b373a3e50286534df73d07215c11d14d71dda
  Author: Ralf Gommers <ralf.gommers at googlemail.com>
  Date:   2012-08-22 (Wed, 22 Aug 2012)

  Changed paths:
    M numpy/lib/utils.py

  Log Message:
  -----------
  MAINT: silence DeprecationWarning in np.safe_eval().

It comes from the Python compiler package, which isn't available on Python 3.x.
We already handle that issue by instead importing the ast module.


  Commit: 68320a10f2e29a70a9a39110263c040aab689147
      https://github.com/numpy/numpy/commit/68320a10f2e29a70a9a39110263c040aab689147
  Author: njsmith <njs at pobox.com>
  Date:   2012-08-31 (Fri, 31 Aug 2012)

  Changed paths:
    M numpy/lib/utils.py

  Log Message:
  -----------
  Merge pull request #390 from rgommers/silence-deprecation-warning

MAINT: silence DeprecationWarning in np.safe_eval().


Compare: https://github.com/numpy/numpy/compare/5c944b9c6915...68320a10f2e2

From noreply at github.com  Fri Aug 31 17:45:41 2012
From: noreply at github.com (GitHub)
Date: Fri, 31 Aug 2012 14:45:41 -0700
Subject: [Numpy-svn] [numpy/numpy] 93100c: Fix returned copy
Message-ID: <50413085f3933_67431a32af466153@sh3.rs.github.com.mail>

  Branch: refs/heads/master
  Home:   https://github.com/numpy/numpy
  Commit: 93100c92b57dd9663b688fdd94efc7d05ef7ff38
      https://github.com/numpy/numpy/commit/93100c92b57dd9663b688fdd94efc7d05ef7ff38
  Author: Jay Bourque <jay.bourque at continuum.io>
  Date:   2012-08-31 (Fri, 31 Aug 2012)

  Changed paths:
    M numpy/core/_internal.py
    M numpy/core/tests/test_multiarray.py

  Log Message:
  -----------
  Fix returned copy

Fix returned copy so that copy of view with offsets copies only fields in view, not all the fields from original array. Also add unit tests to make sure this doesn't break when copy is fully deprecated in favor of returning a view.


  Commit: c6d8734eddc133d2fe6babc7bde53d5e981945a1
      https://github.com/numpy/numpy/commit/c6d8734eddc133d2fe6babc7bde53d5e981945a1
  Author: Ond?ej ?ert?k <ondrej.certik at gmail.com>
  Date:   2012-08-31 (Fri, 31 Aug 2012)

  Changed paths:
    M numpy/core/_internal.py
    M numpy/core/tests/test_multiarray.py

  Log Message:
  -----------
  Merge pull request #401 from jayvius/get-view-fix

BUG: Fix Ticket #2187


Compare: https://github.com/numpy/numpy/compare/68320a10f2e2...c6d8734eddc1

From noreply at github.com  Fri Aug 31 18:04:31 2012
From: noreply at github.com (GitHub)
Date: Fri, 31 Aug 2012 15:04:31 -0700
Subject: [Numpy-svn] [numpy/numpy] ecbd93: FIX: bug in np.where and recarray
	swapping
Message-ID: <504134ef9f6af_5b15ec7ae8639d@sh3.rs.github.com.mail>

  Branch: refs/heads/master
  Home:   https://github.com/numpy/numpy
  Commit: ecbd938adb1a370017a5ff8ca20b2c66141f48fe
      https://github.com/numpy/numpy/commit/ecbd938adb1a370017a5ff8ca20b2c66141f48fe
  Author: Ond?ej ?ert?k <ondrej.certik at gmail.com>
  Date:   2012-08-29 (Wed, 29 Aug 2012)

  Changed paths:
    M numpy/core/src/multiarray/scalarapi.c
    M numpy/core/tests/test_regression.py

  Log Message:
  -----------
  FIX: bug in np.where and recarray swapping

Fixes #369 and the Ticket 2185

Thanks to @seberg for providing the patch.


  Commit: 8c75aa01e2f4ec02eb1d852a14da3e9e03107da8
      https://github.com/numpy/numpy/commit/8c75aa01e2f4ec02eb1d852a14da3e9e03107da8
  Author: Ond?ej ?ert?k <ondrej.certik at gmail.com>
  Date:   2012-08-31 (Fri, 31 Aug 2012)

  Changed paths:
    M numpy/core/src/multiarray/scalarapi.c
    M numpy/core/tests/test_regression.py

  Log Message:
  -----------
  Merge pull request #395 from certik/fix369

FIX: bug in np.where and recarray swapping


Compare: https://github.com/numpy/numpy/compare/c6d8734eddc1...8c75aa01e2f4

From noreply at github.com  Fri Aug 31 18:46:43 2012
From: noreply at github.com (GitHub)
Date: Fri, 31 Aug 2012 15:46:43 -0700
Subject: [Numpy-svn] [numpy/numpy] 8b2e6b: BUG: Fix ticket #1588/gh issue
 #398, refcount erro...
Message-ID: <50413ed332c6e_92510d4ae833068@sh3.rs.github.com.mail>

  Branch: refs/heads/master
  Home:   https://github.com/numpy/numpy
  Commit: 8b2e6bed904415006d59344b27a0b23b35fab9ca
      https://github.com/numpy/numpy/commit/8b2e6bed904415006d59344b27a0b23b35fab9ca
  Author: Mark Wiebe <mwwiebe at gmail.com>
  Date:   2012-08-31 (Fri, 31 Aug 2012)

  Changed paths:
    M numpy/core/src/multiarray/calculation.c

  Log Message:
  -----------
  BUG: Fix ticket #1588/gh issue #398, refcount error in clip

This patch enforces a strict dichotomy for the variables 'indescr'
and 'newdescr', so they are either NULL, or they own a reference.
Following the consequences of this allowed the reference error
to be tracked down.


  Commit: 103988055053f7a30083fd28c0887a5f2922a67c
      https://github.com/numpy/numpy/commit/103988055053f7a30083fd28c0887a5f2922a67c
  Author: Ond?ej ?ert?k <ondrej.certik at gmail.com>
  Date:   2012-08-31 (Fri, 31 Aug 2012)

  Changed paths:
    M numpy/core/tests/test_regression.py

  Log Message:
  -----------
  BUG: Add a test for Ticket #1588

The bug was fixed by the previous patch.


  Commit: e60c70d7ca5dbe45860c44673ddab02d47770155
      https://github.com/numpy/numpy/commit/e60c70d7ca5dbe45860c44673ddab02d47770155
  Author: Ond?ej ?ert?k <ondrej.certik at gmail.com>
  Date:   2012-08-31 (Fri, 31 Aug 2012)

  Changed paths:
    M numpy/core/src/multiarray/calculation.c
    M numpy/core/tests/test_regression.py

  Log Message:
  -----------
  Merge pull request #405 from certik/pr400_fix

BUG: Fix ticket #1588/gh issue #398, refcount error in clip


Compare: https://github.com/numpy/numpy/compare/8c75aa01e2f4...e60c70d7ca5d