[pypy-issue] [issue727] Confusing error/traceback when using Biopython pairwise2

etal tracker at bugs.pypy.org
Tue May 24 16:49:55 CEST 2011


etal <eric.talevich at gmail.com> added the comment:

Thanks, that fixed it.

Following up: This issue arose while I was trying to benchmark sequence
alignment on Pypy. Comparing PyPy 1.5 to CPython 2.6 with the compiled C
extension module, now, Pypy is about twice as fast. Would you be interested in
using this algorithm (Needleman-Wunsch) as a benchmark? (I can remove the
Biopython dependency.)

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PyPy bug tracker <tracker at bugs.pypy.org>
<https://bugs.pypy.org/issue727>
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