extracting substrings from a file
sofiafig at gmail.com
sofiafig at gmail.com
Mon Sep 11 08:29:17 EDT 2006
Hi,
I have a file with several entries in the form:
AFFX-BioB-5_at E. coli /GEN=bioB /gb:J04423.1 NOTE=SIF
corresponding to nucleotides 2032-2305 of /gb:J04423.1 DEF=E.coli
7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB),
7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and
dethiobiotin synthetase (bioD), complete cds.
1415785_a_at /gb:NM_009840.1 /DB_XREF=gi:6753327 /GEN=Cct8 /FEA=FLmRNA
/CNT=482 /TID=Mm.17989.1 /TIER=FL+Stack /STK=281 /UG=Mm.17989 /LL=12469
/DEF=Mus musculus chaperonin subunit 8 (theta) (Cct8), mRNA.
/PROD=chaperonin subunit 8 (theta) /FL=/gb:NM_009840.1 /gb:BC009007.1
and I would like to create a file that has only the following:
AFFX-BioB-5_at /GEN=bioB /gb:J04423.1
1415785_a_at /gb:NM_009840.1 /GEN=Cct8
Could anyone please tell me how can I do it?
Many thanks in advance
Sofia
More information about the Python-list
mailing list